Browse Element(s) Details


Os.54449.1.S1_at

Description gb:AK105194.1
DB_XREF= gi:32990403
TID=Os.54449.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-E02, full insert sequence.
FL= gb:AK105194.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4288011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42860Os.14249.1.S1_a_at11/112+25761430..25768571ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os02g42870Os.55708.1.A1_at11/112+25772210..25774926Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g42880Os.54449.1.S1_at11/112+25783370..25785344Remorin, C-terminal region family protein, expressed
LOC_Os02g42890OsAffx.24693.1.S1_at11/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42890Os.51361.1.S1_at10/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42900OsAffx.2945.1.S1_at11/112+25797244..25797987hypothetical protein
LOC_Os02g42910OsAffx.12465.1.S1_at11/112+25800084..25807541expressed protein
LOC_Os02g42920Os.55694.1.S1_at11/112+25810059..25814987expressed protein
LOC_Os02g42920OsAffx.24694.1.S1_x_at11/112+25810059..25814987expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54449.1.S1_at--880--4611Chr02:25784561..25784585 (25 bp)
GCGAGAATCGTTGATCAAAGCATGG
LOC_Os02g42880
Os.54449.1.S1_at--527--8171Chr02:25783757..25783781 (25 bp)
GGAAGCAATCGTCCATAAGGAAGCT
LOC_Os02g42880
Os.54449.1.S1_at--862--4191Chr02:25783707..25783731 (25 bp)
CCCGGCGCGGTGAAGAAGTGATCAA
LOC_Os02g42880
Os.54449.1.S1_at--323--1171Chr02:25783662..25783686 (25 bp)
AGTACCGTGCAACCGGAGTGACACC
LOC_Os02g42880
Os.54449.1.S1_at--770--8011Chr02:25783648..25783672 (25 bp)
GGAGTGACACCGAAGAAACATATCG
LOC_Os02g42880
Os.54449.1.S1_at--589--7591Chr02:25783614..25783638 (25 bp)
GGGCATAAGAAACATCGATCCGAGC
LOC_Os02g42880
Os.54449.1.S1_at--1070--511Chr02:25783601..25783625 (25 bp)
ATCGATCCGAGCCATATACTTGTTT
LOC_Os02g42880
Os.54449.1.S1_at--1028--4211Chr02:25783595..25783619 (25 bp)
CCGAGCCATATACTTGTTTTTCTTT
LOC_Os02g42880
Os.54449.1.S1_at--428--10191Chr02:25783557..25783581 (25 bp)
TATTTGTGTTGGGTTGTAACTTGTA
LOC_Os02g42880
Os.54449.1.S1_at--449--9471Chr02:25783402..25783540 (25 bp)
TCTTTGGGTGGTCTAAAACATTTCG
LOC_Os02g42880
Os.54449.1.S1_at--1151--2391Chr02:25783387..25783411 (25 bp)
AAACATTTCGAGTGCAGTTAATAAT
LOC_Os02g42880
Target Sequence 
GCGAGAATCGTTGATCAAAGCATGGGAGGAGAACGAAAAGGCAAAAGCGGAGAACAGGGCCTNTAAGAAGTTATTGGATA
TTATTTCATGGGAGAACACAAAGAAGGCAGTAATAAAAACTCAACTGAAAAAGAAGGAAGAAGAGTTGGAAAGGAAGAAG
GCAGAGTACGCTGAGAAGGCGAAGAACAAGGAAGCAATCGTCCATAAGGAAGCTGAAGAAAAGAGAGCAATGGTGATGGC
CCGGCGCGGTGAAGAAGTGATCAAGGCCGAGGAGATAGCAGNTAAGTACCGTGCAACCGGAGTGACACCGAAGAAACATA
TCGGGTGTNTTNGGGCATAAGAAACATCGATCCGAGCCATATACTTGTTTTTCTTTNTCTTTNGAAAGTTATTTGTGTTG
GGTTGTAACTTGTAAGTGTGTACTNTTTTTTTCTTTNGAAAAATTGGAACCATGNCATTATAATTTTGTAAAATTTNAGA
TATGCNATCCTGATCCACATGTCATTGATTTATGTAGGTCCTACATGTCATTGACTCATGATTTTTTCTTTGGGTGGTCT
AAAACATTTCGAGTGCAGTTAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis