Browse Element(s) Details


OsAffx.24693.1.S1_at

Description tigr:9630.m04113
TID=OsAffx.24693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome b561
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4289011/11Cytochrome b561 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42860Os.14249.1.S1_a_at11/112+25761430..25768571ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os02g42870Os.55708.1.A1_at11/112+25772210..25774926Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g42880Os.54449.1.S1_at11/112+25783370..25785344Remorin, C-terminal region family protein, expressed
LOC_Os02g42890OsAffx.24693.1.S1_at11/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42890Os.51361.1.S1_at10/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42900OsAffx.2945.1.S1_at11/112+25797244..25797987hypothetical protein
LOC_Os02g42910OsAffx.12465.1.S1_at11/112+25800084..25807541expressed protein
LOC_Os02g42920Os.55694.1.S1_at11/112+25810059..25814987expressed protein
LOC_Os02g42920OsAffx.24694.1.S1_x_at11/112+25810059..25814987expressed protein
LOC_Os02g42930OsAffx.2946.1.S1_at11/112+25817855..25818280hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016021cellular_componentintegral to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0008805molecular_functioncarbon-monoxide oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24693.1.S1_at--586--4151Chr02:25793924..25793948 (25 bp)
CGCCTTCGAGGCCACAAACAAGAAC
LOC_Os02g42890
OsAffx.24693.1.S1_at--755--10871Chr02:25792748..25792772 (25 bp)
TTGGCTATATAATCCTAGGCAGTGA
LOC_Os02g42890
OsAffx.24693.1.S1_at--552--7811Chr02:25792634..25792658 (25 bp)
GGTATACAAGGTCCTTCCTACTTGG
LOC_Os02g42890
OsAffx.24693.1.S1_at--375--6471Chr02:25792603..25792627 (25 bp)
GATACAACTAAGCTGATCCATCTAA
LOC_Os02g42890
OsAffx.24693.1.S1_at--588--431Chr02:25792584..25792608 (25 bp)
ATCTAATTCTCCATGCAATTGCCCT
LOC_Os02g42890
OsAffx.24693.1.S1_at--1068--651Chr02:25792572..25792596 (25 bp)
ATGCAATTGCCCTTGTATTCGGTGC
LOC_Os02g42890
OsAffx.24693.1.S1_at--620--4311Chr02:25792562..25792586 (25 bp)
CCTTGTATTCGGTGCGGTTGGGATA
LOC_Os02g42890
OsAffx.24693.1.S1_at--221--3971Chr02:25792548..25792572 (25 bp)
CGGTTGGGATATACTGCGCTTTCAA
LOC_Os02g42890
OsAffx.24693.1.S1_at--1011--9911Chr02:25792537..25792561 (25 bp)
TACTGCGCTTTCAAATTTCACAATG
LOC_Os02g42890
OsAffx.24693.1.S1_at--31--3171Chr02:25792505..25792529 (25 bp)
AATTGCCAACCTCTACAGTCTGCAT
LOC_Os02g42890
OsAffx.24693.1.S1_at--771--2131Chr02:25792491..25792515 (25 bp)
ACAGTCTGCATTCTTGGCTTGGGAT
LOC_Os02g42890
Target Sequence 
CGCCTTCGAGGCCACAAACAAGAACCTCATCTTCAACGTTCACCCTGTTCTTATGCTTATTGGCTATATAATCCTAGGCA
GTGAAGCTATAATGGTATACAAGGTCCTTCCTACTTGGAAGCATGATACAACTAAGCTGATCCATCTAATTCTCCATGCA
ATTGCCCTTGTATTCGGTGCGGTTGGGATATACTGCGCTTTCAAATTTCACAATGAAAGTGGAATTGCCAACCTCTACAG
TCTGCATTCTTGGCTTGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis