Browse Element(s) Details


OsAffx.2945.1.S1_at

Description tigr:9630.m04114
TID=OsAffx.2945.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4290011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42870Os.55708.1.A1_at11/112+25772210..25774926Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g42880Os.54449.1.S1_at11/112+25783370..25785344Remorin, C-terminal region family protein, expressed
LOC_Os02g42890OsAffx.24693.1.S1_at11/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42890Os.51361.1.S1_at10/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42900OsAffx.2945.1.S1_at11/112+25797244..25797987hypothetical protein
LOC_Os02g42910OsAffx.12465.1.S1_at11/112+25800084..25807541expressed protein
LOC_Os02g42920Os.55694.1.S1_at11/112+25810059..25814987expressed protein
LOC_Os02g42920OsAffx.24694.1.S1_x_at11/112+25810059..25814987expressed protein
LOC_Os02g42930OsAffx.2946.1.S1_at11/112+25817855..25818280hypothetical protein
LOC_Os02g42940Os.5388.1.S1_at10/112+25822495..25825767VAP27, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2945.1.S1_at--861--1871Chr02:25797788..25797812 (25 bp)
ACGAGGTGCTGCTGCGAGCCGGCCG
LOC_Os02g42900
OsAffx.2945.1.S1_at--115--4531Chr02:25797759..25797783 (25 bp)
GCCGCGGAGTACCTCGTGAACATCG
LOC_Os02g42900
OsAffx.2945.1.S1_at--791--5091Chr02:25797682..25797706 (25 bp)
GCACGCGCCATTTCAGGGCTACCAA
LOC_Os02g42900
OsAffx.2945.1.S1_at--642--10531Chr02:25797671..25797695 (25 bp)
TTCAGGGCTACCAACAACGCCAGTG
LOC_Os02g42900
OsAffx.2945.1.S1_at--1016--5071Chr02:25797610..25797634 (25 bp)
GCACCCGCAGCATGGGTTCCAGGCA
LOC_Os02g42900
OsAffx.2945.1.S1_at--556--791Chr02:25797599..25797623 (25 bp)
ATGGGTTCCAGGCATCGCGCTCGTC
LOC_Os02g42900
OsAffx.2945.1.S1_at--418--8471Chr02:25797568..25797592 (25 bp)
TGGCCCGATCCGCAATATCGCGAAG
LOC_Os02g42900
OsAffx.2945.1.S1_at--304--3191Chr02:25797556..25797580 (25 bp)
CAATATCGCGAAGCGGGCAGTAGTA
LOC_Os02g42900
OsAffx.2945.1.S1_at--1067--4051Chr02:25797367..25797391 (25 bp)
CGATGGGTCTGACGCGACAGCACCA
LOC_Os02g42900
OsAffx.2945.1.S1_at--17--4571Chr02:25797293..25797317 (25 bp)
GCGCGGCACACGGTCAACCGGAGAA
LOC_Os02g42900
OsAffx.2945.1.S1_at--851--3151Chr02:25797285..25797309 (25 bp)
CACGGTCAACCGGAGAAGGGCCAGC
LOC_Os02g42900
Target Sequence 
ACGAGGTGCTGCTGCGAGCCGGCCGCCTCGCCGCGGAGTACCTCGTGAACATCGGCGAGCTGCCCCCGGACGCGCTGCTG
CAGGGCCGCCACCCGCCTCCTCCGCCGCACGCGCCATTTCAGGGCTACCAACAACGCCAGTGGCCGCCGCCGCGCGGACA
CCCGTGGCACGAAGGCCCGCACCCGCAGCATGGGTTCCAGGCATCGCGCTCGTCCGCGGTTGGCCCGATCCGCAATATCG
CGAAGCGGGCAGTAGTACGCGGCGGCGGCGGCGGCGGGACGTTCCGAGGACGCGGCGGGCGGTTTCCCTCTCGTCGGCCC
GGCGCGAGTGGCGCCGCTGCTCCGGAGACGGCAGGGGAGCCCGGGCATGGCCAGGGAGTGGCGCCTGGCGCTGATGTTGG
CGGGGTGGTGGGGGTGCGCGGCGATGGGTCTGACGCGACAGCACCAGCGGGGCCGAGTAGCGGGCGGCAGCCGTCGGCGG
CGGCGCATCCAGGTGGCGCGGCACACGGTCAACCGGAGAAGGGCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis