Browse Element(s) Details


Os.55694.1.S1_at

Description gb:AK108580.1
DB_XREF= gi:32993789
TID=Os.55694.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-H05, full insert sequence.
FL= gb:AK108580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4292011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42880Os.54449.1.S1_at11/112+25783370..25785344Remorin, C-terminal region family protein, expressed
LOC_Os02g42890OsAffx.24693.1.S1_at11/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42890Os.51361.1.S1_at10/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42900OsAffx.2945.1.S1_at11/112+25797244..25797987hypothetical protein
LOC_Os02g42910OsAffx.12465.1.S1_at11/112+25800084..25807541expressed protein
LOC_Os02g42920Os.55694.1.S1_at11/112+25810059..25814987expressed protein
LOC_Os02g42920OsAffx.24694.1.S1_x_at11/112+25810059..25814987expressed protein
LOC_Os02g42930OsAffx.2946.1.S1_at11/112+25817855..25818280hypothetical protein
LOC_Os02g42940Os.5388.1.S1_at10/112+25822495..25825767VAP27, putative, expressed
LOC_Os02g42950Os.54793.1.S1_at11/112+25833450..25836836yabby15 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55694.1.S1_at--1093--4891Chr02:25814836..25814860 (25 bp)
GCTTCGCAAACCTGAGGATAGCAAG
LOC_Os02g42920
Os.55694.1.S1_at--184--7951Chr02:25814851..25814875 (25 bp)
GGATAGCAAGCATTGAGAGTTCACT
LOC_Os02g42920
Os.55694.1.S1_at--725--8891Chr02:25814864..25814888 (25 bp)
TGAGAGTTCACTGTTTTTCCTTTCC
LOC_Os02g42920
Os.55694.1.S1_at--423--10351Chr02:25814877..25814901 (25 bp)
TTTTTCCTTTCCTAACGACATGCAT
LOC_Os02g42920
Os.55694.1.S1_at--120--9251Chr02:25814881..25814905 (25 bp)
TCCTTTCCTAACGACATGCATATAA
LOC_Os02g42920
Os.55694.1.S1_at--491--5671Chr02:25814893..25814917 (25 bp)
GACATGCATATAAAGTTTTGGTCAA
LOC_Os02g42920
Os.55694.1.S1_at--451--7791Chr02:25814912..25814936 (25 bp)
GGTCAATTATTTAGGGTCAATGGTC
LOC_Os02g42920
Os.55694.1.S1_at--999--7691Chr02:25814925..25814949 (25 bp)
GGGTCAATGGTCTATACACATATTC
LOC_Os02g42920
Os.55694.1.S1_at--507--7811Chr02:25814933..25814957 (25 bp)
GGTCTATACACATATTCTGTAGTGG
LOC_Os02g42920
Os.55694.1.S1_at--141--3311Chr02:25814941..25814965 (25 bp)
CACATATTCTGTAGTGGTAATAATC
LOC_Os02g42920
Os.55694.1.S1_at--939--351Chr02:25814963..25814987 (25 bp)
ATCAAGAGTTTTTCTTATTCGATTG
LOC_Os02g42920
Target Sequence 
GCTTCGCAAACCTGAGGATAGCAAGCATTGAGAGTTCACTGTTTTTCCTTTCCTAACGACATGCATATAAAGTTTTGGTC
AATTATTTAGGGTCAATGGTCTATACACATATTCTGTAGTGGTAATAATCAAGAGTTTTTCTTATTCGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis