Browse Element(s) Details


Os.27696.1.S1_at

Description gb:AK069955.1
DB_XREF= gi:32979979
TID=Os.27696.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.27696 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036G10, full insert sequence.
FL= gb:AK104429.1 gb:AK119786.1 gb:AK104082.1 gb:AK069955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2526011/11GDA1/CD39 family protein, expressed
LOC_Os11g253307/11GDA1/CD39 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25210NANA11+13861599..13867581retrotransposon protein, putative, unclassified
LOC_Os11g25220OsAffx.31126.1.S1_at11/1111+13868076..13868780oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os11g25230OsAffx.31127.1.S1_at11/1111+13870258..13873837Tropinone reductase homolog At1g07440, putative
LOC_Os11g25240NANA11+13881745..13883972hypothetical protein
LOC_Os11g25260Os.27696.1.S1_at11/1111+13889985..13897860GDA1/CD39 family protein, expressed
LOC_Os11g25270NANA11+13901872..13903632retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25280Os.7307.3.S1_x_at3/1111+13903987..13907971retrotransposon protein, putative, unclassified
LOC_Os11g25290NANA11+13909425..13912398retrotransposon protein, putative, unclassified
LOC_Os11g25300OsAffx.7197.1.S1_at10/1111+13912586..13913728hypothetical protein
LOC_Os11g25310NANA11+13919056..13920106hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0004551molecular_functionnucleotide diphosphatase activity
GO:0005516molecular_functioncalmodulin binding
GO:0016787molecular_functionhydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27696.1.S1_at--1047--4612Chr11:13928639..13928663 (25 bp)
GCGAGTCCCGGAACTGCAGCTTCAA
LOC_Os11g25330
Os.27696.1.S1_at--964--7252Chr11:13928563..13928587 (25 bp)
GTCCTACTTCTACGACAGGGCGGTG
LOC_Os11g25330
Os.27696.1.S1_at--559--5032Chr11:13928407..13928431 (25 bp)
GCAGTTCATATGCATGGACCTGACG
LOC_Os11g25330
Os.27696.1.S1_at--1026--8092Chr11:13928392..13928416 (25 bp)
GGACCTGACGTACCAGTACACATTG
LOC_Os11g25330
Os.27696.1.S1_at--920--3572Chr11:13928374..13928396 (23 bp)
CATTGCTTACAAAGGGCTTCGGTTT
LOC_Os11g25330
Os.27696.1.S1_at--893--7672Chr11:13926805..13926829 (25 bp)
GGGTACTGCCATAGAAGCCTTGTCC
LOC_Os11g25330
Os.27696.1.S1_at--284--10812Chr11:13926786..13926810 (25 bp)
TTGTCCTCCCAGAAGAGTCATCAGT
LOC_Os11g25330
Os.27696.1.S1_at--976--6092Chr11:13926772..13926796 (25 bp)
GAGTCATCAGTCTGCATGATCCATT
NONE
Os.27696.1.S1_at--313--6372Chr11:13926755..13926779 (25 bp)
GATCCATTTAGCTATATCACGCAAG
NONE
Os.27696.1.S1_at--148--6932Chr11:13926715..13926739 (25 bp)
GTATGTGTTCTGATTCACGTACGTT
NONE
Os.27696.1.S1_at--871--10012Chr11:13926657..13926681 (25 bp)
TAGCAAATTCATAACACTGCGCAAT
NONE
Target Sequence 
GCGAGTCCCGGAACTGCAGCTTCAACGGCGTGTGGAACGGCGGCGGCGGCGCCGGCATGGCCGACCTCTACGTGGCGTCC
TACTTCTACGACAGGGCGGTGCACGGCGGGTTCGTCGTCGACGACGCGCCGAGCGCCGTGACCACCCCGGCGGCGTTCGC
GGAGGCGGCGTCGAAGGCCTGCTCGCTGAGCTCCGGCGAGNCCGCGGCCGCGTACCCGGAGGCGTTCGACGTGCAGTTCA
TATGCATGGACCTGACGTACCAGTACACATTGCTTACAAAGGGCTTCGGTTTGAAGCCAACTAGGGAGATGACGCTTGTG
AAACAGGTCAAGTATGGGGATTGCTACGTGGAGTCGGCGTGGCCGCTGGGTACTGCCATAGAAGCCTTGTCCTCCCAGAA
GAGTCATCAGTCTGCATGATCCATTTAGCTATATCACGCAAGGATGCCTACATATATGTATGTGTTCTGATTCACGTACG
TTTGAGCGGTGGAGAAGATGTTTGGCAGATTTGAGTAGCAAATTCATAACACTGCGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis