Browse Element(s) Details


OsAffx.31126.1.S1_at

Description tigr:9639.m02239
TID=OsAffx.31126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=short chain alcohol dehydrogenase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2522011/11oxidoreductase, short chain dehydrogenase/reductase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25180Os.47463.1.S1_x_at4/1111+13841378..13848256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25180Os.14491.2.S1_x_at3/1111+13841378..13848256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25190NANA11+13855170..13856962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25200NANA11+13857349..13857853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25210NANA11+13861599..13867581retrotransposon protein, putative, unclassified
LOC_Os11g25220OsAffx.31126.1.S1_at11/1111+13868076..13868780oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os11g25230OsAffx.31127.1.S1_at11/1111+13870258..13873837Tropinone reductase homolog At1g07440, putative
LOC_Os11g25240NANA11+13881745..13883972hypothetical protein
LOC_Os11g25260Os.27696.1.S1_at11/1111+13889985..13897860GDA1/CD39 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31126.1.S1_at--955--3931Chr11:13868138..13868159 (22 bp)
CGGCGGTAGCAAAGGCATCGGGAAC
LOC_Os11g25220
OsAffx.31126.1.S1_at--478--2931Chr11:13868149..13868331 (25 bp)
AAGGCATCGGGAACGAGGCAGAGCT
LOC_Os11g25220
OsAffx.31126.1.S1_at--583--591Chr11:13868338..13868362 (25 bp)
ATGCCAGGAGGAGTGCAACTCCAGG
LOC_Os11g25220
OsAffx.31126.1.S1_at--255--1791Chr11:13868375..13868399 (25 bp)
ACCGTCTCCGCTTGCGACGTGTCGG
LOC_Os11g25220
OsAffx.31126.1.S1_at--1155--8531Chr11:13868608..13868632 (25 bp)
TGGAGGAGACGTCGAGTTTGATGGC
LOC_Os11g25220
OsAffx.31126.1.S1_at--270--1711Chr11:13868634..13868658 (25 bp)
ACCAACTTCGAGTCATGCTTTCACA
LOC_Os11g25220
OsAffx.31126.1.S1_at--248--3271Chr11:13868636..13868660 (25 bp)
CAACTTCGAGTCATGCTTTCACATG
LOC_Os11g25220
OsAffx.31126.1.S1_at--842--631Chr11:13868648..13868672 (25 bp)
ATGCTTTCACATGAGCCAGCTGGCG
LOC_Os11g25220
OsAffx.31126.1.S1_at--355--3771Chr11:13868690..13868714 (25 bp)
CTCTGGGAGGGGGAACATCATCAAC
LOC_Os11g25220
OsAffx.31126.1.S1_at--179--431Chr11:13868706..13868730 (25 bp)
ATCATCAACATCTCTTCTGCGGCTA
LOC_Os11g25220
OsAffx.31126.1.S1_at--890--371Chr11:13868709..13868733 (25 bp)
ATCAACATCTCTTCTGCGGCTACCT
LOC_Os11g25220
Target Sequence 
CGGCGGTAGCAAAGGCATCGGGAACGAGGCAGAGCTGAGCAGATGCCAGGAGGAGTGCAACTCCAGGGGCCTCGCCGTCA
CCGTCTCCGCTTGCGACGTGTCGGTGCGTGCCGACAGGGAGGCGCTCGCCGCCAGGGTGAACAACGTTGGGACGTCGTAC
CTGAAGCCGGCGGTGGAGCTGACGCTGGAGGAGACGTCGAGTTTGATGGCGACCAACTTCGAGTCATGCTTTCACATGAG
CCAGCTGGCGTACCCTCTCCTCAAGGCCTCTGGGAGGGGGAACATCATCAACATCTCTTCTGCGGCTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis