Browse Element(s) Details


Os.27745.1.A1_at

Description gb:CB682267
DB_XREF= gi:29685992
DB_XREF=OSJNEf09G09.r
CLONE=OSJNEf09G09
TID=Os.27745.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27745 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_564875.1 (A.thaliana) fructokinase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1260011/11Fructokinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12580Os.49196.1.S1_at11/116+6815407..6818817expressed protein
LOC_Os06g12580Os.10184.1.S1_s_at11/116+6815407..6818817expressed protein
LOC_Os06g12590Os.14975.1.S2_at11/116+6821983..6831863Protein kinase domain containing protein, expressed
LOC_Os06g12590Os.14975.1.S1_at11/116+6821983..6831863Protein kinase domain containing protein, expressed
LOC_Os06g12590Os.12612.1.S1_at1/116+6821983..6831863Protein kinase domain containing protein, expressed
LOC_Os06g12600Os.27745.1.A1_at11/116+6841981..6847490Fructokinase, putative, expressed
LOC_Os06g12610Os.54305.1.S1_at11/116+6865394..6868522Auxin efflux carrier component 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27745.1.A1_at--856--471Chr06:6845722..6845746 (25 bp)
ATCTGAAACTGCTTCTTGTCACTGA
LOC_Os06g12600
Os.27745.1.A1_at--745--8991Chr06:6846743..6846767 (25 bp)
TGAATGCTGTTGACACCACTGGTGC
LOC_Os06g12600
Os.27745.1.A1_at--930--3331Chr06:6846759..6846783 (25 bp)
CACTGGTGCTGGAGATGCCTTTGTT
LOC_Os06g12600
Os.27745.1.A1_at--739--8211Chr06:6846787..6846811 (25 bp)
GGAATACTATCCCAGCTATCTGTTG
LOC_Os06g12600
Os.27745.1.A1_at--515--6011Chr06:6847217..6847241 (25 bp)
GAGAGAGGAGCCATCCCGGCATTGC
LOC_Os06g12600
Os.27745.1.A1_at--182--5651Chr06:6847248..6847272 (25 bp)
GACAGCAAGTGGTTGATGCCCTAAC
LOC_Os06g12600
Os.27745.1.A1_at--606--7051Chr06:6847293..6847317 (25 bp)
GTAACTTATCTTATTTCTCGTGTAA
LOC_Os06g12600
Os.27745.1.A1_at--987--3791Chr06:6847337..6847361 (25 bp)
CTCGCAGCACCACGTTGTTAGAATA
LOC_Os06g12600
Os.27745.1.A1_at--1044--10831Chr06:6847382..6847406 (25 bp)
TTGGTGTGAATACTCATGGCGCCTT
LOC_Os06g12600
Os.27745.1.A1_at--847--871Chr06:6847397..6847421 (25 bp)
ATGGCGCCTTGGTGATGTGTCAACT
LOC_Os06g12600
Os.27745.1.A1_at--1057--8731Chr06:6847414..6847438 (25 bp)
TGTCAACTGTCAACCGTGGCTTCCA
LOC_Os06g12600
Target Sequence 
ATCTGAAACTGCTTCTTGTCACTGAAGGTCCAGAAGGTTGTAGATATTATTCTAAGGAATTTAATGGGAGAGTTGGTGGA
CTTAAGGTGAATGCTGTTGACACCACTGGTGCTGGAGATGCCTTTGTTGCTGGAATACTATCCCAGCTATCTGTTGATTT
TTCACTGCTGCAGGATGAAGGCCGATTGAAAGAAGCTCTAAAGTTTGCAAATGTCTGTGGGGCTCTCACTGTGACAGAGA
GAGGAGCCATCCCGGCATTGCCCACTCGACAGCAAGTGGTTGATGCCCTAACAAAGGTTGTTGCTTAAAAATGTAACTTA
TCTTATTTCTCGTGTAAATCAAATTGTGAAAAAGGCCTCGCAGCACCACGTTGTTAGAATAGGTTTATTTGTTCGTGCAA
TTTGGTGTGAATACTCATGGCGCCTTGGTGATGTGTCAACTGTCAACCGTGGCTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27745.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis