Browse Element(s) Details

Os.27788.1.S1_at

Description

gb:AK107075.1
DB_XREF= gi:32992284
TID=Os.27788.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-F03, full insert sequence.
FL= gb:AK107075.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g41450	11/11	VQ motif family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g41410	Os.35458.1.S1_at	11/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	OsAffx.15876.1.A1_at	9/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	Os.36709.1.S1_x_at	3/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	Os.8753.4.S1_x_at	1/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	Os.6763.1.S1_x_at	1/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	OsAffx.5273.1.S1_at	1/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41440	Os.5275.1.S1_at	10/11	6	+	24830707..24838945	legume lectins beta domain PF\|00139 containing protein, putative, expressed
LOC_Os06g41450	Os.27788.1.S1_at	11/11	6	+	24842687..24843763	VQ motif family protein, expressed
LOC_Os06g41460	Os.10827.1.S1_x_at	11/11	6	+	24849445..24852357	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41460	Os.46055.2.S1_x_at	6/11	6	+	24849445..24852357	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470	OsAffx.25936.1.S1_s_at	11/11	6	+	24855831..24858767	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470	OsAffx.25936.7.S1_s_at	11/11	6	+	24855831..24858767	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470	OsAffx.25936.2.S1_x_at	5/11	6	+	24855831..24858767	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470	OsAffx.25936.5.S1_x_at	2/11	6	+	24855831..24858767	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41480	Os.52222.1.S1_at	11/11	6	+	24865900..24870160	NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27788.1.S1_at--502--857	1	Chr06:24843162..24843186 (25 bp)	TGGATTTGGCTACGATCATCCCGAT	LOC_Os06g41450
Os.27788.1.S1_at--178--337	1	Chr06:24843135..24843159 (25 bp)	CACCGACCTGTGGATGGATCTGAAT	LOC_Os06g41450
Os.27788.1.S1_at--872--55	1	Chr06:24843112..24843136 (25 bp)	ATCCGGGAGGGTTCTTGAGCTTCTT	LOC_Os06g41450
Os.27788.1.S1_at--88--97	1	Chr06:24843079..24843103 (25 bp)	AGGACGTGTTCCAAGGCATGGCTGC	LOC_Os06g41450
Os.27788.1.S1_at--979--303	1	Chr06:24843043..24843067 (25 bp)	AATCGCCTCTTGGTTCATCGAGGAT	LOC_Os06g41450
Os.27788.1.S1_at--39--663	1	Chr06:24843011..24843035 (25 bp)	GTTGGTGAAATGTACGCATCTTAAT	LOC_Os06g41450
Os.27788.1.S1_at--767--655	1	Chr06:24842976..24843000 (25 bp)	GATTAGAGGTTCAATTTCCTTTTGG	LOC_Os06g41450
Os.27788.1.S1_at--1059--977	1	Chr06:24842836..24842860 (25 bp)	TAAGTAAGTATTGCACCCATGGTTG	LOC_Os06g41450
Os.27788.1.S1_at--1011--21	1	Chr06:24842750..24842774 (25 bp)	ATTTGGGTGCTTAAATCTGTCTGCA	LOC_Os06g41450
Os.27788.1.S1_at--513--947	1	Chr06:24842735..24842759 (25 bp)	TCTGTCTGCAGGTCTCTCAAATGTA	LOC_Os06g41450
Os.27788.1.S1_at--891--879	1	Chr06:24842700..24842724 (25 bp)	TGTTCTTTCGCATATGGAGCTCTCC	LOC_Os06g41450

Target Sequence

TGGATTTGGCTACGATCATCCCGATCACACCGACCTGTGGATGGATCTGAATCCGGGAGGGTTCTTGAGCTTCTTGGAGG
AGGAGGACGTGTTCCAAGGCATGGCTGCCGACCTGTTCCAATCGCCTCTTGGTTCATCGAGGATGGATTTCGTTGGTGAA
ATGTACGCATCTTAATTAGTATTTGGGATTAGAGGTTCAATTTCCTTTTGGTTTACTTTGTGAGAATTTTTGCATTTTGG
TTGAGAGGTTTGGATGGTCTTCAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAAGGGGATAAACACAATGGTGAT
GATGGTTAAGTAAGTATTGCACCCATGGTTGCAATAATTGGTGATGTGTATGCAAGGGTTATTGGTGGGATATTTATAGA
AGGAATGATCAAATTTGGGTGCTTAAATCTGTCTGCAGGTCTCTCAAATGTAAATATGTAATTGTTCTTTCGCATATGGA
GCTCTCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis