Browse Element(s) Details


Os.27939.1.A1_at

Description gb:AK069874.1
DB_XREF= gi:32979898
TID=Os.27939.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035P22, full insert sequence.
FL= gb:AK069874.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5715011/11Tafazzin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57110OsAffx.20387.1.S1_x_at2/114+33810010..33815670retrotransposon protein, putative, unclassified
LOC_Os04g57130Os.55340.1.S1_at11/114+33819310..33820364expressed protein
LOC_Os04g57140Os.14699.1.S1_at8/114+33821058..33830470kinesin-like calmodulin binding protein, putative, expressed
LOC_Os04g57150Os.27939.1.A1_at11/114+33835254..33839085Tafazzin, putative, expressed
LOC_Os04g57160NANA4+33840976..33843492oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57170OsAffx.14454.1.S1_at11/114+33845694..33846643hypothetical protein
LOC_Os04g57180Os.49944.1.S1_at10/114+33848590..33851736oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_s_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190Os.24656.1.S1_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_at9/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57200Os.7115.1.S1_a_at11/114+33861558..33862845heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27939.1.A1_at--681--5571Chr04:33835815..33835839 (25 bp)
GAAATCATTTTTTGGGCGTCGACCG
LOC_Os04g57150
Os.27939.1.A1_at--79--4171Chr04:33835792..33835816 (25 bp)
CGCCAGTGCCTCTTTGGAACAAGGA
LOC_Os04g57150
Os.27939.1.A1_at--543--9871Chr04:33835765..33835789 (25 bp)
TACATATCATCGTTGGAGAGCCAGT
LOC_Os04g57150
Os.27939.1.A1_at--745--8551Chr04:33835741..33835765 (25 bp)
TGGAGTTTGATCTGCCAAGCTTGAA
LOC_Os04g57150
Os.27939.1.A1_at--222--8252Chr05:17699885..17699907 (22 bp)
GGCAGCAAGAACAGTACCTCAGGAT
NONE
Os.27939.1.A1_at--323--1191Chr04:33835701..33835725 (25 bp)
AGTACCTCAGGATTCATCTTTTGAA
LOC_Os04g57150
Os.27939.1.A1_at--418--2311Chr04:33835678..33835702 (25 bp)
AAAGGAAGGGTTGGCCAAGCATCAT
LOC_Os04g57150
Os.27939.1.A1_at--671--2711Chr04:33835662..33835686 (25 bp)
AAGCATCATGCCAGACGGACTAGAT
LOC_Os04g57150
Os.27939.1.A1_at--112--4831Chr04:33835631..33835655 (25 bp)
GCTCAGAGATGGCTTTACCAGAAGA
LOC_Os04g57150
Os.27939.1.A1_at--418--9511Chr04:33835560..33835584 (25 bp)
TCTCGACCTGAAGCAACATTGATAT
LOC_Os04g57150
Os.27939.1.A1_at--803--231Chr04:33835539..33835563 (25 bp)
ATATTTGGCTGTTTACTTGCAATCC
LOC_Os04g57150
Target Sequence 
GAAATCATTTTTTGGGCGTCGACCGCCAGTGCCTCTTTGGAACAAGGAGATACATATCATCGTTGGAGAGCCAGTGGAGT
TTGATCTGCCAAGCTTGAAGCAGGCAGCAAGAACAGTACCTCAGGATTCATCTTTTGAAAGGAAGGGTTGGCCAAGCATC
ATGCCAGACGGACTAGATGAAGCGGCTCAGAGATGGCTTTACCAGAAGATATCAGATAAGATCCAATCAGTTATGGAGAC
ATTGCGGAAGAGACTTCTCGACCTGAAGCAACATTGATATTTGGCTGTTTACTTGCAATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27939.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis