Browse Element(s) Details


Os.14699.1.S1_at

Description gb:AK073209.1
DB_XREF= gi:32983232
TID=Os.14699.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23390 kinesin-like calmodulin-binding protein-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033009N20, full insert sequence.
FL= gb:AK073001.1 gb:AK073209.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g571408/11kinesin-like calmodulin binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57070OsAffx.26643.2.S1_at11/114+33795025..33796687SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57080OsAffx.14453.1.S1_at11/114+33798360..33800490SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57090NANA4+33803567..33805014SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os04g57100Os.53479.1.S1_x_at1/114+33806379..33809394retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g57100OsAffx.22004.1.S1_at1/114+33806379..33809394retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g57110OsAffx.20387.1.S1_x_at2/114+33810010..33815670retrotransposon protein, putative, unclassified
LOC_Os04g57130Os.55340.1.S1_at11/114+33819310..33820364expressed protein
LOC_Os04g57140Os.14699.1.S1_at8/114+33821058..33830470kinesin-like calmodulin binding protein, putative, expressed
LOC_Os04g57150Os.27939.1.A1_at11/114+33835254..33839085Tafazzin, putative, expressed
LOC_Os04g57160NANA4+33840976..33843492oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57170OsAffx.14454.1.S1_at11/114+33845694..33846643hypothetical protein
LOC_Os04g57180Os.49944.1.S1_at10/114+33848590..33851736oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_s_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190Os.24656.1.S1_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_at9/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0005871cellular_componentkinesin complex
GO:0003777molecular_functionmicrotubule motor activity
GO:0005516molecular_functioncalmodulin binding
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14699.1.S1_at--409--1531Chr04:33821465..33821489 (25 bp)
AGCATGTTGCCCCAAAGGAAATCAT
LOC_Os04g57140
Os.14699.1.S1_at--1045--5031Chr04:33821337..33821361 (25 bp)
GCAGATAATCGCTTGACTAGCTGAG
LOC_Os04g57140
Os.14699.1.S1_at--556--7851Chr04:33821307..33821331 (25 bp)
GGTACCATCAGAATTCTATGCCCCT
LOC_Os04g57140
Os.14699.1.S1_at--651--571Chr04:33821276..33821300 (25 bp)
ATCCTTGCACCGTCTGCAGAGGTGA
LOC_Os04g57140
Os.14699.1.S1_at--854--8811Chr04:33821247..33821271 (25 bp)
TGTTGATGATCATTTTCGACTCGCC
LOC_Os04g57140
Os.14699.1.S1_at--389--2651Chr04:33821189..33821213 (25 bp)
GAACCTTCCGGTATGACCTAACAAT
LOC_Os04g57140
Os.14699.1.S1_at--669--8511Chr04:33821129..33821153 (25 bp)
TGGCAATGATGCCTCTTGTACAAAG
LOC_Os04g57140
Os.14699.1.S1_at--933--2871Chr04:33821107..33821131 (25 bp)
AAGGGAACCGTAGCACACATTCATA
LOC_Os04g57140
Os.14699.1.S1_at--317--5491Chr04:33821030..33821054 (25 bp)
GAACATTGGTGTGCCACGACTACTG
NONE
Os.14699.1.S1_at--282--4911Chr04:33821006..33821030 (25 bp)
GCTTCTGCTCACTTCTATAGCAGTG
NONE
Os.14699.1.S1_at--509--6251Chr04:33820948..33820972 (25 bp)
GATGGTGATTTCCACGTTATCGTTC
NONE
Target Sequence 
AGCATGTTGCCCCAAAGGAAATCATGAGGTTGAAGAAGTTAATTGCTTATTGGAAGGANCNAANGCTGNCAAGCNTANGT
GAAGNNCGNACGACCTGGAGGAAATACAGGAAGAGAGGACACCAAAGGAGAAAGCAGATAATCGCTTGACTAGCTGAGAA
CAAGGTACCATCAGAATTCTATGCCCCTGGTTGCATCCTTGCACCGTCTGCAGAGGTGACTGATGTTGATGATCATTTTC
GACTCGCCGACGCCGACGTGTTCACCAATCACCCGCTAACAGAACCTTCCGGTATGACCTAACAATGTTGTACACCAATT
GTATAGTAACAGATTATATTATGGCAATGATGCCTCTTGTACAAAGGGAACCGTAGCACACATTCATAGGAGAATCAGAT
GGTGGAAGAGTTATTAGAACTAAGCTCCNNNNTGTCCCCTGAACATTGGTGTGCCACGACTACTGCTTCTGCTCACTTCT
ATAGCAGTGTAGCAAATGTTTGTGGCATCAGATGGACTAGCGGATGGTGATTTCCACGTTATCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis