Browse Element(s) Details


OsAffx.26643.2.S1_at

Description tigr:9632.m05567
TID=OsAffx.26643.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5707011/11SAM dependent carboxyl methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57020Os.26386.1.S1_a_at11/114+33767327..33770868expressed protein
LOC_Os04g57030OsAffx.26642.1.S1_at11/114+33771024..33771479VQ motif family protein
LOC_Os04g57040OsAffx.14451.1.S1_at11/114+33778673..33781552hypothetical protein
LOC_Os04g57050OsAffx.26643.1.S1_at11/114+33782242..33786150SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57060NANA4+33789017..33793983retrotransposon protein, putative, unclassified
LOC_Os04g57070OsAffx.26643.2.S1_at11/114+33795025..33796687SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57080OsAffx.14453.1.S1_at11/114+33798360..33800490SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57090NANA4+33803567..33805014SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os04g57100Os.53479.1.S1_x_at1/114+33806379..33809394retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g57100OsAffx.22004.1.S1_at1/114+33806379..33809394retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g57110OsAffx.20387.1.S1_x_at2/114+33810010..33815670retrotransposon protein, putative, unclassified
LOC_Os04g57130Os.55340.1.S1_at11/114+33819310..33820364expressed protein
LOC_Os04g57140Os.14699.1.S1_at8/114+33821058..33830470kinesin-like calmodulin binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26643.2.S1_at--97--8391Chr04:33796149..33796173 (25 bp)
GGCGACAGTTCCAGTCTGACATGAT
LOC_Os04g57070
OsAffx.26643.2.S1_at--876--8651Chr04:33796256..33796280 (25 bp)
TGTGGCCCCACGGATCAAGGCTACA
LOC_Os04g57070
OsAffx.26643.2.S1_at--357--7431Chr04:33796289..33796313 (25 bp)
GTGTATGGCGTCATGTTCGACGACT
LOC_Os04g57070
OsAffx.26643.2.S1_at--821--731Chr04:33796301..33796325 (25 bp)
ATGTTCGACGACTCATGGCGTGACC
LOC_Os04g57070
OsAffx.26643.2.S1_at--790--3491Chr04:33796314..33796338 (25 bp)
CATGGCGTGACCTCATCGAAGAGGG
LOC_Os04g57070
OsAffx.26643.2.S1_at--1127--1271Chr04:33796452..33796476 (25 bp)
AGATCGTGATGGCAAGCCCTCCTGT
LOC_Os04g57070
OsAffx.26643.2.S1_at--507--4251Chr04:33796506..33796530 (25 bp)
CCGGGCGCATGGTGGCAAACTACGT
LOC_Os04g57070
OsAffx.26643.2.S1_at--679--811Chr04:33796514..33796538 (25 bp)
ATGGTGGCAAACTACGTGCGCGCCC
LOC_Os04g57070
OsAffx.26643.2.S1_at--173--7711Chr04:33796572..33796596 (25 bp)
GGGTGATGGCTGATGAGCTATTCAT
LOC_Os04g57070
OsAffx.26643.2.S1_at--1034--1551Chr04:33796587..33796611 (25 bp)
AGCTATTCATCCGAATGCAGCGCCA
LOC_Os04g57070
OsAffx.26643.2.S1_at--26--3011Chr04:33796600..33796624 (25 bp)
AATGCAGCGCCACGCGGAAATACGT
LOC_Os04g57070
Target Sequence 
GGCGACAGTTCCAGTCTGACATGATGCGCTTTCTACACTGTCGCGCCGCCGAGCTGAAGACTGGTGGTGCCATTTTCATC
GTCAGCCTTGGCCGCCTGTCGTCCACCTGTGGCCCCACGGATCAAGGCTACATCTATGAAGTGTATGGCGTCATGTTCGA
CGACTCATGGCGTGACCTCATCGAAGAGGGGATGGTCGACGGCGAGAAGATGGACAGCTTTAATGTCCCCCTTTATGCTC
CTACAGTGGAAGAGTTCAAGGAGGTTGTGGACGCCGACGGCTCGTTCAAGATCAACGAGTTGGAGATCGTGATGGCAAGC
CCTCCTGTCGTGGATGATCCCGCTGACCGCGGCATGGCCGGGCGCATGGTGGCAAACTACGTGCGCGCCCTCCTCGGGCT
ACTCATCGACACGCACATCGGCGGGGTGATGGCTGATGAGCTATTCATCCGAATGCAGCGCCACGCGGAAATACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26643.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis