Browse Element(s) Details


OsAffx.14451.1.S1_at

Description tigr:9632.m05564
TID=OsAffx.14451.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5704011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56990Os.7512.1.S1_at11/114+33753705..33756668myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g57010Os.5810.1.S1_at11/114+33763910..33767186Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57020Os.26386.1.S1_a_at11/114+33767327..33770868expressed protein
LOC_Os04g57030OsAffx.26642.1.S1_at11/114+33771024..33771479VQ motif family protein
LOC_Os04g57040OsAffx.14451.1.S1_at11/114+33778673..33781552hypothetical protein
LOC_Os04g57050OsAffx.26643.1.S1_at11/114+33782242..33786150SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57060NANA4+33789017..33793983retrotransposon protein, putative, unclassified
LOC_Os04g57070OsAffx.26643.2.S1_at11/114+33795025..33796687SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57080OsAffx.14453.1.S1_at11/114+33798360..33800490SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57090NANA4+33803567..33805014SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os04g57100Os.53479.1.S1_x_at1/114+33806379..33809394retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g57100OsAffx.22004.1.S1_at1/114+33806379..33809394retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14451.1.S1_at--54--10511Chr04:33780062..33780084 (23 bp)
TTCTAGCGCTAGCAATACTACACTA
LOC_Os04g57040
OsAffx.14451.1.S1_at--797--5611Chr04:33780085..33780109 (25 bp)
GACAAGCTGGTGAATCTTCTCAGGA
LOC_Os04g57040
OsAffx.14451.1.S1_at--357--651Chr04:33780128..33780152 (25 bp)
ATGCAGAATCGTTTCGTTTGGAGGA
LOC_Os04g57040
OsAffx.14451.1.S1_at--18--8411Chr04:33781050..33781074 (25 bp)
GGCGCGTCATGCATACGTTGTGTGT
LOC_Os04g57040
OsAffx.14451.1.S1_at--1141--8691Chr04:33781072..33781096 (25 bp)
TGTGCCGCACGTCGATCTCGTGGAA
LOC_Os04g57040
OsAffx.14451.1.S1_at--679--7031Chr04:33781155..33781179 (25 bp)
GTACAGCTTTGGATTGTGATCGGAC
LOC_Os04g57040
OsAffx.14451.1.S1_at--748--1931Chr04:33781178..33781202 (25 bp)
ACGGACGCCAGACGCAGCAAGACAA
LOC_Os04g57040
OsAffx.14451.1.S1_at--855--2991Chr04:33781211..33781235 (25 bp)
AATGACCGTTGGATGACGATCCGAG
LOC_Os04g57040
OsAffx.14451.1.S1_at--674--8851Chr04:33781432..33781456 (25 bp)
TGATCGTCTTCCTATTTGTTCTCAA
LOC_Os04g57040
OsAffx.14451.1.S1_at--864--6711Chr04:33781449..33781473 (25 bp)
GTTCTCAAGCTCTTCTTAAGGTTGT
LOC_Os04g57040
OsAffx.14451.1.S1_at--1117--9751Chr04:33781465..33781489 (25 bp)
TAAGGTTGTCATTGTGGGTGCACTA
LOC_Os04g57040
Target Sequence 
TTCTAGCGCTAGCAATACTACACTAGACAAGCTGGTGAATCTTCTCAGGAAAAAAGACGAAGAAAATAATGCAGAATCGT
TTCGTTTGGAGGAGGGGCGCGTCATGCATACGTTGTGTGTGCCGCACGTCGATCTCGTGGAAGTAGAAGCGGAGGCTTTT
GCCGGGAGCCGGAGCAGGAAGGGAAACAAGCAGAGAATGAGTACAGCTTTGGATTGTGATCGGACGGACGCCAGACGCAG
CAAGACAAGGGGCCGAAATGACCGTTGGATGACGATCCGAGGGCCACCGAGACGAGCAACCAGAAGGCAGAAAAACCAGC
TGCTTAATTCCCCCCGCGTGCCGCTGATGGGTCGGCACACCGCAATGGCCGCAACAGCGAAAATTAACGCAATGAAGAAG
GGGATTTCCAACAGGTTTGAAGATTTAAGATTGACCCCCCGGAATTGCAAGGTACAGCAGTACCATAGAGTGGAATTTGA
TCGTCTTCCTATTTGTTCTCAAGCTCTTCTTAAGGTTGTCATTGTGGGTGCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis