Browse Element(s) Details


OsAffx.26643.1.S1_at

Description tigr:9632.m05565
TID=OsAffx.26643.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5705011/11SAM dependent carboxyl methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57010Os.5810.1.S1_at11/114+33763910..33767186Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57020Os.26386.1.S1_a_at11/114+33767327..33770868expressed protein
LOC_Os04g57030OsAffx.26642.1.S1_at11/114+33771024..33771479VQ motif family protein
LOC_Os04g57040OsAffx.14451.1.S1_at11/114+33778673..33781552hypothetical protein
LOC_Os04g57050OsAffx.26643.1.S1_at11/114+33782242..33786150SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57060NANA4+33789017..33793983retrotransposon protein, putative, unclassified
LOC_Os04g57070OsAffx.26643.2.S1_at11/114+33795025..33796687SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57080OsAffx.14453.1.S1_at11/114+33798360..33800490SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57090NANA4+33803567..33805014SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os04g57100Os.53479.1.S1_x_at1/114+33806379..33809394retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g57100OsAffx.22004.1.S1_at1/114+33806379..33809394retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g57110OsAffx.20387.1.S1_x_at2/114+33810010..33815670retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26643.1.S1_at--229--1351Chr04:33785594..33785618 (25 bp)
AGACGGGCACGGCATACCAACGACA
LOC_Os04g57050
OsAffx.26643.1.S1_at--591--9971Chr04:33785608..33785632 (25 bp)
TACCAACGACAATTCCGGTCTGACA
LOC_Os04g57050
OsAffx.26643.1.S1_at--908--9411Chr04:33785652..33785676 (25 bp)
TCGTGCCGCCGAGATGAAGCCTGGT
LOC_Os04g57050
OsAffx.26643.1.S1_at--1141--51Chr04:33785756..33785780 (25 bp)
ATTGCAGCATGTTCGAGGACTCATT
LOC_Os04g57050
OsAffx.26643.1.S1_at--156--8131Chr04:33785772..33785796 (25 bp)
GGACTCATTGCGTGATCTCATCGAA
LOC_Os04g57050
OsAffx.26643.1.S1_at--761--4191Chr04:33785839..33785863 (25 bp)
CCCCTTTACGCTGCTACAGTAGAGG
LOC_Os04g57050
OsAffx.26643.1.S1_at--591--3251Chr04:33785904..33785928 (25 bp)
CAACCAGTTGGAGCTCGTGATGGGA
LOC_Os04g57050
OsAffx.26643.1.S1_at--588--7191Chr04:33785968..33785992 (25 bp)
GTCGGGCGCATGGTAGCGAACTACA
LOC_Os04g57050
OsAffx.26643.1.S1_at--1012--5471Chr04:33785985..33786009 (25 bp)
GAACTACATGCGTGCCCTCTTTGGG
LOC_Os04g57050
OsAffx.26643.1.S1_at--6--4631Chr04:33786037..33786061 (25 bp)
GCGATGGCTGACGAGCTGTTCATCC
LOC_Os04g57050
OsAffx.26643.1.S1_at--556--1131Chr04:33786068..33786092 (25 bp)
AGTGCCGCGCAGAAATACGTGCCGA
LOC_Os04g57050
Target Sequence 
AGACGGGCACGGCATACCAACGACAATTCCGGTCTGACATGATGCGCTTTCTACACTGTCGTGCCGCCGAGATGAAGCCT
GGTGGTGCCATTTTCATTGTCAGCCTTGGCCGCCTATCATCCACCCGCGGCCCCACGGAGCAAGGCTACATCTATGAAGT
GTATTGCAGCATGTTCGAGGACTCATTGCGTGATCTCATCGAAGAGGAGATGGTCGATGGCGAGAAGATGGACAACTTTA
ACGTCCCCCTTTACGCTGCTACAGTAGAGGAGTTCAAGGAGGCTGTGGACGCCGACGGCTCGTTTAAGATCAACCAGTTG
GAGCTCGTGATGGGAAGCCCTCCCGTCGTGGATGATCCCGCTAACCGCGGCGTGGTCGGGCGCATGGTAGCGAACTACAT
GCGTGCCCTCTTTGGGCCACTCGTCAACACGCACATCGGCGGGGCGATGGCTGACGAGCTGTTCATCCGGATGCAGTGCC
GCGCAGAAATACGTGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis