Browse Element(s) Details


Os.5810.1.S1_at

Description gb:AK121951.1
DB_XREF= gi:37991574
TID=Os.5810.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107K04, full insert sequence.
FL= gb:AK121951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5701011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56970Os.12173.1.S1_at11/114+33744604..33747684Cell division protein ftsZ homolog, chloroplast precursor, putative, expressed
LOC_Os04g56980Os.17366.1.S1_at11/114+33749545..33753475SWIB/MDM2 domain containing protein, expressed
LOC_Os04g56990Os.7512.1.S1_at11/114+33753705..33756668myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g57010Os.5810.1.S1_at11/114+33763910..33767186Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57020Os.26386.1.S1_a_at11/114+33767327..33770868expressed protein
LOC_Os04g57030OsAffx.26642.1.S1_at11/114+33771024..33771479VQ motif family protein
LOC_Os04g57040OsAffx.14451.1.S1_at11/114+33778673..33781552hypothetical protein
LOC_Os04g57050OsAffx.26643.1.S1_at11/114+33782242..33786150SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57060NANA4+33789017..33793983retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5810.1.S1_at--396--5911Chr04:33766652..33766676 (25 bp)
GAGCTCATTGCAACAATCAGCCCGA
LOC_Os04g57010
Os.5810.1.S1_at--716--2751Chr04:33766688..33766712 (25 bp)
AAGAAACCCGCTGGTTCAGCAGCAG
LOC_Os04g57010
Os.5810.1.S1_at--1160--5411Chr04:33766785..33766809 (25 bp)
TGAAGGGAACCTGCACGTTCGGCGA
LOC_Os04g57010
Os.5810.1.S1_at--1038--2871Chr04:33766847..33766871 (25 bp)
AAGGGCGCTGCTTGAGAGCCGAAAC
LOC_Os04g57010
Os.5810.1.S1_at--162--111Chr04:33766894..33766918 (25 bp)
ATTCTCCATTGCCTTTTGTGACTAT
LOC_Os04g57010
Os.5810.1.S1_at--962--10191Chr04:33766918..33766942 (25 bp)
TATATATCTCTGCATCTTTAGGTGA
LOC_Os04g57010
Os.5810.1.S1_at--2--10451Chr04:33766978..33767002 (25 bp)
TTACGTTTTCGGTTCAGCTTTTGAT
LOC_Os04g57010
Os.5810.1.S1_at--1040--7731Chr04:33767038..33767062 (25 bp)
GGTGTATGCCAGTGTAGAGCTCCCT
LOC_Os04g57010
Os.5810.1.S1_at--596--1371Chr04:33767053..33767077 (25 bp)
AGAGCTCCCTCTTTCAGTATCTTCA
LOC_Os04g57010
Os.5810.1.S1_at--44--6911Chr04:33767069..33767093 (25 bp)
GTATCTTCACCCTCACTTTATTCAT
LOC_Os04g57010
Os.5810.1.S1_at--84--10791Chr04:33767161..33767185 (25 bp)
TTGTTGGATGATGCTACGCTTCTCT
LOC_Os04g57010
Target Sequence 
GAGCTCATTGCAACAATCAGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCAGCACCAGCAGGCCG
AGGCGGCCCCGGGGGCAGGAGCAACTACAAGACCAAGCTGTGCGAGAACTTCGTGAAGGGAACCTGCACGTTCGGCGACC
GATGCCACTTCGCTCATGGCGAGAACGAGCAGCGGAAGGGCGCTGCTTGAGAGCCGAAACGCATCTTGGGCGCGGCGCAC
TAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTATTGCGATTTTCTATAT
GGATTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTCTAAGAAGCAAATAACTTAGTCTTTCTGGGGTGTATGCCAGTG
TAGAGCTCCCTCTTTCAGTATCTTCACCCTCACTTTATTCATCTANTAGTAGTTTCATCAGTTGAGGACAGTGGAGTTCA
TTTTGCCCAAAACTGAGACCCTTGAACNACTTGTTGGATGATGCTACGCTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis