Browse Element(s) Details


Os.12173.1.S1_at

Description gb:AF383876.1
DB_XREF= gi:14495343
TID=Os.12173.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12173 (NCBI UniGene Cluster)
DEF=Oryza sativa plastid division protein FtsZ mRNA, complete cds, nuclear gene for chloroplast protein.
PROD=plastid division protein FtsZ
FL= gb:AK105869.1 gb:AK073455.1 gb:AF383876.1 gb:AK058568.1 gb:AK103448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5697011/11Cell division protein ftsZ homolog, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56920OsAffx.14447.1.S1_at11/114+33721869..33724367Beta-fructofuranosidase, insoluble isoenzyme 6 precursor, putative, expressed
LOC_Os04g56930OsAffx.14448.1.S1_at11/114+33724952..33727453Beta-fructofuranosidase, insoluble isoenzyme 5, putative, expressed
LOC_Os04g56940OsAffx.14449.1.S1_at11/114+33729174..33729788hypothetical protein
LOC_Os04g56950Os.57112.1.S1_at11/114+33731186..33733503SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os04g56960OsAffx.14450.1.S1_at11/114+33734071..33735797expressed protein
LOC_Os04g56970Os.12173.1.S1_at11/114+33744604..33747684Cell division protein ftsZ homolog, chloroplast precursor, putative, expressed
LOC_Os04g56980Os.17366.1.S1_at11/114+33749545..33753475SWIB/MDM2 domain containing protein, expressed
LOC_Os04g56990Os.7512.1.S1_at11/114+33753705..33756668myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g57010Os.5810.1.S1_at11/114+33763910..33767186Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57020Os.26386.1.S1_a_at11/114+33767327..33770868expressed protein
LOC_Os04g57030OsAffx.26642.1.S1_at11/114+33771024..33771479VQ motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0010020biological_processchloroplast fission
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0005198molecular_functionstructural molecule activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12173.1.S1_at--143--6612Chr09:17083739..17083759 (21 bp)
GATTGTGACAAGCTTGGCCGATCCT
NONE
Os.12173.1.S1_at--1109--8451Chr04:33745223..33745247 (25 bp)
TGGCCGATCCTTCTGCAAATATAAT
LOC_Os04g56970
Os.12173.1.S1_at--1098--8331Chr04:33745192..33745216 (25 bp)
GGCTGTTGTTGATGACCGGTACACT
LOC_Os04g56970
Os.12173.1.S1_at--320--5771Chr04:33745153..33745177 (25 bp)
GACGATCATTGCCACAGGGTTTCCA
LOC_Os04g56970
Os.12173.1.S1_at--688--7671Chr04:33745137..33745161 (25 bp)
GGGTTTCCACAATCCTTTCAGAAGT
LOC_Os04g56970
Os.12173.1.S1_at--276--10331Chr04:33745122..33745146 (25 bp)
TTTCAGAAGTCCCTTTTGGCCGATC
LOC_Os04g56970
Os.12173.1.S1_at--547--8011Chr04:33744992..33745016 (25 bp)
GGAGGCTCTTTTCCTGAACACGGTT
LOC_Os04g56970
Os.12173.1.S1_at--777--8211Chr04:33744927..33744951 (25 bp)
GGAATTACTGAGTTGGCGCTCCAAT
LOC_Os04g56970
Os.12173.1.S1_at--196--4791Chr04:33744910..33744934 (25 bp)
GCTCCAATCAGGCTTCTATGTGTTA
LOC_Os04g56970
Os.12173.1.S1_at--440--1031Chr04:33744802..33744826 (25 bp)
AGGTCTTCAGGAGTTCAGCAGCCGT
LOC_Os04g56970
Os.12173.1.S1_at--633--5071Chr04:33744785..33744809 (25 bp)
GCAGCCGTCACGAATTTTTATTGTA
LOC_Os04g56970
Target Sequence 
GATTGTGACAAGCTTGGCCGATCCTTCTGCAAATATAATTTTCGGGGCTGTTGTTGATGACCGGTACACTGGTGAGATTC
ATGTGACGATCATTGCCACAGGGTTTCCACAATCCTTTCAGAAGTCCCTTTTGGCCGATCCCAAGGGTGCAAGAATAATG
GAGGCCAAAGAAAAGGCAGCGAACCTCACCTATAAAGCAGTGGCAGCGGCGACGGTACAACCAGCGCCCGCCGCCACTTG
GTCTCGGAGGCTCTTTTCCTGAACACGGTTCAATAGGAAAACTAGTAGTTTGTGTACCTTAGATTCTCATGGAATTACTG
AGTTGGCGCTCCAATCAGGCTTCTATGTGTTATTCTTTTTGGATATGTAAACACTTAACAGTTACACATAGTGATTAGCT
TCACTTTTATTGTATGTATCATCTAGATGAGGTTGAGGTCTTCAGGAGTTCAGCAGCCGTCACGAATTTTTATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis