Browse Element(s) Details


OsAffx.14450.1.S1_at

Description tigr:9632.m05555
TID=OsAffx.14450.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5696011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56910OsAffx.14446.1.S1_s_at11/114+33709619..33711623Transferase family protein, expressed
LOC_Os04g56920OsAffx.14447.1.S1_at11/114+33721869..33724367Beta-fructofuranosidase, insoluble isoenzyme 6 precursor, putative, expressed
LOC_Os04g56930OsAffx.14448.1.S1_at11/114+33724952..33727453Beta-fructofuranosidase, insoluble isoenzyme 5, putative, expressed
LOC_Os04g56940OsAffx.14449.1.S1_at11/114+33729174..33729788hypothetical protein
LOC_Os04g56950Os.57112.1.S1_at11/114+33731186..33733503SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os04g56960OsAffx.14450.1.S1_at11/114+33734071..33735797expressed protein
LOC_Os04g56970Os.12173.1.S1_at11/114+33744604..33747684Cell division protein ftsZ homolog, chloroplast precursor, putative, expressed
LOC_Os04g56980Os.17366.1.S1_at11/114+33749545..33753475SWIB/MDM2 domain containing protein, expressed
LOC_Os04g56990Os.7512.1.S1_at11/114+33753705..33756668myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14450.1.S1_at--519--992Chr11:2435896..2435915 (20 bp)
AGGAGGAGGCGCTTGCCACTGGCGG
NONE
OsAffx.14450.1.S1_at--924--892Chr11:2435897..2435916 (20 bp)
AGGCGCTTGCCACTGGCGGCGGCTG
NONE
OsAffx.14450.1.S1_at--970--5351Chr04:33735685..33735709 (25 bp)
GAAGAGTTGAGATCAGATTACTGTA
LOC_Os04g56960
OsAffx.14450.1.S1_at--877--391Chr04:33735696..33735720 (25 bp)
ATCAGATTACTGTACTATGTCATGG
LOC_Os04g56960
OsAffx.14450.1.S1_at--911--3431Chr04:33735698..33735722 (25 bp)
CAGATTACTGTACTATGTCATGGTA
LOC_Os04g56960
OsAffx.14450.1.S1_at--1086--9911Chr04:33735703..33735727 (25 bp)
TACTGTACTATGTCATGGTATGCGC
LOC_Os04g56960
OsAffx.14450.1.S1_at--874--3871Chr04:33735705..33735729 (25 bp)
CTGTACTATGTCATGGTATGCGCAT
LOC_Os04g56960
OsAffx.14450.1.S1_at--527--2031Chr04:33735709..33735733 (25 bp)
ACTATGTCATGGTATGCGCATGCGC
LOC_Os04g56960
OsAffx.14450.1.S1_at--784--751Chr04:33735712..33735736 (25 bp)
ATGTCATGGTATGCGCATGCGCGTT
LOC_Os04g56960
OsAffx.14450.1.S1_at--217--611Chr04:33735722..33735746 (25 bp)
ATGCGCATGCGCGTTCGGGACTCCA
LOC_Os04g56960
OsAffx.14450.1.S1_at--893--571Chr04:33735728..33735752 (25 bp)
ATGCGCGTTCGGGACTCCAGTGTTT
LOC_Os04g56960
Target Sequence 
AGGAGGAGGCGCTTGCCACTGGCGGCGGCTGCGGTGGTGGAGAGGGAGGTGGAAGGAAGAGTTGAGATCAGATTACTGTA
CTATGTCATGGTATGCGCATGCGCGTTCGGGACTCCAGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis