Browse Element(s) Details


OsAffx.14446.1.S1_s_at

Description tigr:9632.m05550
TID=OsAffx.14446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5691011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56880NANA4+33685560..33686947Zinc knuckle family protein
LOC_Os04g56890NANA4+33689506..33692099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56894NANA4+33692849..33693242NA
LOC_Os04g56900Os.49568.1.S1_at5/114+33706492..33707924Transferase family protein, expressed
LOC_Os04g56910OsAffx.14446.1.S1_s_at11/114+33709619..33711623Transferase family protein, expressed
LOC_Os04g56920OsAffx.14447.1.S1_at11/114+33721869..33724367Beta-fructofuranosidase, insoluble isoenzyme 6 precursor, putative, expressed
LOC_Os04g56930OsAffx.14448.1.S1_at11/114+33724952..33727453Beta-fructofuranosidase, insoluble isoenzyme 5, putative, expressed
LOC_Os04g56940OsAffx.14449.1.S1_at11/114+33729174..33729788hypothetical protein
LOC_Os04g56950Os.57112.1.S1_at11/114+33731186..33733503SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os04g56960OsAffx.14450.1.S1_at11/114+33734071..33735797expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14446.1.S1_s_at--548--431Chr04:33710006..33710030 (25 bp)
ATCTTGTTTTTCCATGTCGCTTAAA
LOC_Os04g56910
OsAffx.14446.1.S1_s_at--14--9791Chr04:33709936..33709960 (25 bp)
TAAGCCGTAAAATCCAGCGTGGGTT
LOC_Os04g56910
OsAffx.14446.1.S1_s_at--18--311Chr04:33709880..33709904 (25 bp)
ATAGCTTTTCTTCATATTTGCGGTG
LOC_Os04g56910
OsAffx.14446.1.S1_s_at--772--4611Chr04:33709837..33709861 (25 bp)
GCGAGTCCATTTCATCTTAGTGTCT
LOC_Os04g56910
OsAffx.14446.1.S1_s_at--764--8711Chr04:33709817..33709841 (25 bp)
TGTCTATCCACCTAAACGTCCATGA
LOC_Os04g56910
OsAffx.14446.1.S1_s_at--247--1251Chr04:33709793..33709817 (25 bp)
AGATTGTTCGCTTCTGTTGGCTGTT
LOC_Os04g56910
OsAffx.14446.1.S1_s_at--544--3971Chr04:33709764..33709788 (25 bp)
CGGTAGCGGCTGTGGCCATTGAAAA
LOC_Os04g56910
OsAffx.14446.1.S1_s_at--112--1631Chr04:33709731..33709755 (25 bp)
AGCGGCAGTAGCTTTTGGAGCTCCC
LOC_Os04g56910
OsAffx.14446.1.S1_s_at--1148--8531Chr04:33709716..33709740 (25 bp)
TGGAGCTCCCGCAACTGCAGTGGGT
LOC_Os04g56910
OsAffx.14446.1.S1_s_at--569--7711Chr04:33709695..33709719 (25 bp)
GGGTGCGACAACAATCACTACCGAT
LOC_Os04g56910
OsAffx.14446.1.S1_s_at--1117--3311Chr04:33709680..33709704 (25 bp)
CACTACCGATCAGCCTCTATATAAA
LOC_Os04g56910
Target Sequence 
ATCTTGTTTTTCCATGTCGCTTAAAAAATCATAAAAGTTTTTAAAAAATAAGTAAGAACTAAAAAAATTATAAGCCGTAA
AATCCAGCGTGGGTTTAGAAAGTTTTGATCCCTTTGTTATATGGAAATAGCTTTTCTTCATATTTGCGGTGGGTACATTA
GGTATATTAGCGAGTCCATTTCATCTTAGTGTCTATCCACCTAAACGTCCATGAGATTGTTCGCTTCTGTTGGCTGTTGC
AGCGGTAGCGGCTGTGGCCATTGAAAATGGCTGCCAGCGGCAGTAGCTTTTGGAGCTCCCGCAACTGCAGTGGGTGCGAC
AACAATCACTACCGATCAGCCTCTATATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14446.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis