Browse Element(s) Details


Os.49568.1.S1_at

Description gb:AK109743.1
DB_XREF= gi:32994952
TID=Os.49568.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E07, full insert sequence.
FL= gb:AK109743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g569005/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56870NANA4+33681965..33684183retrotransposon protein, putative, unclassified
LOC_Os04g56880NANA4+33685560..33686947Zinc knuckle family protein
LOC_Os04g56890NANA4+33689506..33692099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56894NANA4+33692849..33693242NA
LOC_Os04g56900Os.49568.1.S1_at5/114+33706492..33707924Transferase family protein, expressed
LOC_Os04g56910OsAffx.14446.1.S1_s_at11/114+33709619..33711623Transferase family protein, expressed
LOC_Os04g56920OsAffx.14447.1.S1_at11/114+33721869..33724367Beta-fructofuranosidase, insoluble isoenzyme 6 precursor, putative, expressed
LOC_Os04g56930OsAffx.14448.1.S1_at11/114+33724952..33727453Beta-fructofuranosidase, insoluble isoenzyme 5, putative, expressed
LOC_Os04g56940OsAffx.14449.1.S1_at11/114+33729174..33729788hypothetical protein
LOC_Os04g56950Os.57112.1.S1_at11/114+33731186..33733503SAM dependent carboxyl methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49568.1.S1_at--697--8991Chr04:33707485..33707509 (25 bp)
TGAAGCACGCCGTGGAGCTCATCAA
LOC_Os04g56900
Os.49568.1.S1_at--1054--9571Chr04:33707503..33707527 (25 bp)
TCATCAACCGGGAGGTGATCCGGAT
LOC_Os04g56900
Os.49568.1.S1_at--268--5891Chr04:33707771..33707795 (25 bp)
GAGCGTTGACGCGTACGTGCCACTC
LOC_Os04g56900
Os.49568.1.S1_at--546--3231Chr04:33707819..33707843 (25 bp)
CAAGAACTGCTGCTACTCATTCGAC
LOC_Os04g56900
Os.49568.1.S1_at--1132--1211Chr04:33707898..33707922 (25 bp)
AGTTAATGCTAGATCACTTGATTGA
LOC_Os04g56900
Os.49568.1.S1_at--625--3311Chr04:33707912..33707936 (25 bp)
CACTTGATTGAGACTAGTTAGCTAA
NONE
Os.49568.1.S1_at--879--4831Chr04:33707932..33707956 (25 bp)
GCTAATTAGTATTTGTTTGATGTTG
NONE
Os.49568.1.S1_at--859--131Chr04:33707980..33708004 (25 bp)
ATTAATTACGCGAGATGTTCTGCCG
NONE
Os.49568.1.S1_at--412--151Chr04:33707984..33708008 (25 bp)
ATTACGCGAGATGTTCTGCCGATGA
NONE
Os.49568.1.S1_at--508--1831Chr04:33707987..33708011 (25 bp)
ACGCGAGATGTTCTGCCGATGAAAG
NONE
Os.49568.1.S1_at--64--6291Chr04:33707993..33708017 (25 bp)
GATGTTCTGCCGATGAAAGTTGAAT
NONE
Target Sequence 
TGAAGCACGCCGTGGAGCTCATCAACCGGGAGGTGATCCGGATCAACGACGGCTACTTCAAGTCGTTCATCGACTTCGCC
AACTCCGGTGCGGTGGAGGAGGAGCGGCTGGTGGCGTCGGCCGACGCGGCGGAGATGGTGCTGAGCCCGAACATCGAGGT
GGACAGCTGGCTGCGGATCCCGTTCTACGACCTCGACTTCGGCGGCGGGCGGCCATTCTTCTTCANTGCCCANGCTACCT
GCCGGNTGGAAGGTTTNGCTCATCCTGCNNCCGTCTTTCTTCGGCGACGGGAGCGTTGACGCGTACGTGCCACTCTTCAG
CCGCGACATGGACGTCTTCAAGAACTGCTGCTACTCATTCGACNNAAGACCNAACTACTAGCCTTGCATGAACNTATATT
ATTGAAAAACNAGACATNCNAGTTAATGCTAGATCACTTGATTGAGACTAGTTAGCTAATTAGTATTTGTTTGATGTTGT
TGATTCAATTATTATGAATTGAATTAATTACGCGAGATGTTCTGCCGATGAAAGTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis