Browse Element(s) Details


Os.57112.1.S1_at

Description gb:AK110936.1
DB_XREF= gi:32996145
TID=Os.57112.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-G04, full insert sequence.
FL= gb:AK110936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5695011/11SAM dependent carboxyl methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56900Os.49568.1.S1_at5/114+33706492..33707924Transferase family protein, expressed
LOC_Os04g56910OsAffx.14446.1.S1_s_at11/114+33709619..33711623Transferase family protein, expressed
LOC_Os04g56920OsAffx.14447.1.S1_at11/114+33721869..33724367Beta-fructofuranosidase, insoluble isoenzyme 6 precursor, putative, expressed
LOC_Os04g56930OsAffx.14448.1.S1_at11/114+33724952..33727453Beta-fructofuranosidase, insoluble isoenzyme 5, putative, expressed
LOC_Os04g56940OsAffx.14449.1.S1_at11/114+33729174..33729788hypothetical protein
LOC_Os04g56950Os.57112.1.S1_at11/114+33731186..33733503SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os04g56960OsAffx.14450.1.S1_at11/114+33734071..33735797expressed protein
LOC_Os04g56970Os.12173.1.S1_at11/114+33744604..33747684Cell division protein ftsZ homolog, chloroplast precursor, putative, expressed
LOC_Os04g56980Os.17366.1.S1_at11/114+33749545..33753475SWIB/MDM2 domain containing protein, expressed
LOC_Os04g56990Os.7512.1.S1_at11/114+33753705..33756668myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009694biological_processjasmonic acid metabolism
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0005737cellular_componentcytoplasm
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
GO:0030795molecular_functionjasmonate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57112.1.S1_at--555--10671Chr04:33731723..33731747 (25 bp)
TTCCAGGACGCGTGGGACGATCTCG
LOC_Os04g56950
Os.57112.1.S1_at--517--4571Chr04:33731599..33731623 (25 bp)
GCGCGTTCGCGATCGACAGGCTCGA
LOC_Os04g56950
Os.57112.1.S1_at--345--8071Chr04:33731385..33731409 (25 bp)
GGAGAAGATGCACTTCTTCCACGTG
LOC_Os04g56950
Os.57112.1.S1_at--628--4171Chr04:33731341..33731365 (25 bp)
CGCCATAACAGCATCGCAAACGGAT
LOC_Os04g56950
Os.57112.1.S1_at--1161--4631Chr04:33731316..33731340 (25 bp)
GCGTATAGCAGCATCCGCATAGTAG
LOC_Os04g56950
Os.57112.1.S1_at--987--5411Chr04:33731281..33731305 (25 bp)
GAACCCGTTTTGAGTGGTTGCACAC
LOC_Os04g56950
Os.57112.1.S1_at--120--6131Chr04:33731270..33731294 (25 bp)
GAGTGGTTGCACACGAATTTGCTGC
LOC_Os04g56950
Os.57112.1.S1_at--198--5231Chr04:33731256..33731280 (25 bp)
GAATTTGCTGCAGCTTTCTTTCATT
LOC_Os04g56950
Os.57112.1.S1_at--658--9551Chr04:33731240..33731264 (25 bp)
TCTTTCATTTCCTTGGCTTCCAATG
LOC_Os04g56950
Os.57112.1.S1_at--262--8291Chr04:33731226..33731250 (25 bp)
GGCTTCCAATGAAACGAGTTCTACG
LOC_Os04g56950
Os.57112.1.S1_at--52--6731Chr04:33731209..33731233 (25 bp)
GTTCTACGTGTACGTTTGTACCGCA
LOC_Os04g56950
Target Sequence 
TTCCAGGACGCGTGGGACGATCTCGTCCAGGAGGGCGTGGTCGAGGGGGAGAAGAGGGACAGCTTCAACATCCCGGTGTA
CGCGCCGAGCCTGCAGGAGTTCCGCGACGTCGTGCGCGCGGACGGCGCGTTCGCGATCGACAGGCTCGAGCTGGTGAGGG
GAGGGAGTCCGCTGGTGGTGGACCGGCCGGACGACGCGGCGGAGGTCGGCCGCGCCATGGCGAACAGCTGCAAGGCCGTG
GCCGGGGTGCTCGTGGACGCGCACATCGGCGAGCGCCGCGGCGCGCAGCTGTTCGAGCGGCTGGAGCGGCGCGCGGCGAG
GCACGCGAGGGAGCTCGTGGAGAAGATGCACTTCTTCCACGTGGTTTGCTCGCTCTCTCTCGCGCCATAACAGCATCGCA
AACGGATGCGTATAGCAGCATCCGCATAGTAGTAGGTTCGGTGAACCCGTTTTGAGTGGTTGCACACGAATTTGCTGCAG
CTTTCTTTCATTTCCTTGGCTTCCAATGAAACGAGTTCTACGTGTACGTTTGTACCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis