Browse Element(s) Details


Os.7512.1.S1_at

Description gb:AK101951.1
DB_XREF= gi:32987160
TID=Os.7512.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075I07, full insert sequence.
FL= gb:AK101951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5699011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56940OsAffx.14449.1.S1_at11/114+33729174..33729788hypothetical protein
LOC_Os04g56950Os.57112.1.S1_at11/114+33731186..33733503SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os04g56960OsAffx.14450.1.S1_at11/114+33734071..33735797expressed protein
LOC_Os04g56970Os.12173.1.S1_at11/114+33744604..33747684Cell division protein ftsZ homolog, chloroplast precursor, putative, expressed
LOC_Os04g56980Os.17366.1.S1_at11/114+33749545..33753475SWIB/MDM2 domain containing protein, expressed
LOC_Os04g56990Os.7512.1.S1_at11/114+33753705..33756668myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g57010Os.5810.1.S1_at11/114+33763910..33767186Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57020Os.26386.1.S1_a_at11/114+33767327..33770868expressed protein
LOC_Os04g57030OsAffx.26642.1.S1_at11/114+33771024..33771479VQ motif family protein
LOC_Os04g57040OsAffx.14451.1.S1_at11/114+33778673..33781552hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7512.1.S1_at--677--1831Chr04:33754193..33754217 (25 bp)
ACGCGTTCGATGACGTCGACGTGCA
LOC_Os04g56990
Os.7512.1.S1_at--815--9791Chr04:33754115..33754139 (25 bp)
TAAGCTAGGACAGCCTTTTTTGCGT
LOC_Os04g56990
Os.7512.1.S1_at--821--4631Chr04:33754094..33754118 (25 bp)
GCGTTTTGTGTTTTGGCACTTTGAT
LOC_Os04g56990
Os.7512.1.S1_at--838--5611Chr04:33754067..33754091 (25 bp)
GACAAATATTGTTCTGGTTCTTCGA
LOC_Os04g56990
Os.7512.1.S1_at--799--10371Chr04:33753898..33753922 (25 bp)
TTTTCAATTGGCCTGCACTGCATTT
LOC_Os04g56990
Os.7512.1.S1_at--553--6711Chr04:33753866..33753890 (25 bp)
GTTTTAGTTAGGTCTTAGCAGGCAA
LOC_Os04g56990
Os.7512.1.S1_at--198--8231Chr04:33753821..33753845 (25 bp)
GGCAATATATTGCTCATGTCACATT
LOC_Os04g56990
Os.7512.1.S1_at--447--7071Chr04:33753804..33753828 (25 bp)
GTCACATTCACATATGGGCTTGGGA
LOC_Os04g56990
Os.7512.1.S1_at--967--7971Chr04:33753782..33753806 (25 bp)
GGATGCTCTACGTGTACCACCATGA
LOC_Os04g56990
Os.7512.1.S1_at--770--671Chr04:33753761..33753785 (25 bp)
ATGACACCATCCTACGCAGAAAAAG
LOC_Os04g56990
Os.7512.1.S1_at--282--8571Chr04:33753724..33753748 (25 bp)
TGGATATCAACCACAGAACGCAATA
LOC_Os04g56990
Target Sequence 
ACGCGTTCGATGACGTCGACGTGCAGCTGCTGGCCGTCGCTGGCAGCGGCTATGACGACGCCGGGTTCCAGTCCAAAATA
AGCTAGGACAGCCTTTTTTGCGTTTTGTGTTTTGGCACTTTGATTTGACAAATATTGTTCTGGTTCTTCGACGTATGATA
CGCNCAATGCTATNNNNNGCCCGTGNNNTNGGCGAAAGTNTCAAAAAGATATTTTAAGAAAGAGAGTGGGATCCACAGAT
NCGCGCNTNNTTTTTTTTTTTGTAGCTAGTTTGATCAGAGTTGTAAAATTTAGGCTTTTTCAATTGGCCTGCACTGCATT
TCTTAATGGTTTTAGTTAGGTCTTAGCAGGCAAAAAACAGGTTAAGTTCAAGTGGCAATATATTGCTCATGTCACATTCA
CATATGGGCTTGGGATGCTCTACGTGTACCACCATGACACCATCCTACGCAGAAAAAGGAAATTACAAAATGGATATCAA
CCACAGAACGCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis