Browse Element(s) Details


Os.26386.1.S1_a_at

Description gb:AK061504.1
DB_XREF= gi:32971522
TID=Os.26386.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31165 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-E07, full insert sequence.
FL= gb:AK101970.1 gb:AK061504.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5702011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56970Os.12173.1.S1_at11/114+33744604..33747684Cell division protein ftsZ homolog, chloroplast precursor, putative, expressed
LOC_Os04g56980Os.17366.1.S1_at11/114+33749545..33753475SWIB/MDM2 domain containing protein, expressed
LOC_Os04g56990Os.7512.1.S1_at11/114+33753705..33756668myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g57010Os.5810.1.S1_at11/114+33763910..33767186Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57020Os.26386.1.S1_a_at11/114+33767327..33770868expressed protein
LOC_Os04g57030OsAffx.26642.1.S1_at11/114+33771024..33771479VQ motif family protein
LOC_Os04g57040OsAffx.14451.1.S1_at11/114+33778673..33781552hypothetical protein
LOC_Os04g57050OsAffx.26643.1.S1_at11/114+33782242..33786150SAM dependent carboxyl methyltransferase family protein
LOC_Os04g57060NANA4+33789017..33793983retrotransposon protein, putative, unclassified
LOC_Os04g57070OsAffx.26643.2.S1_at11/114+33795025..33796687SAM dependent carboxyl methyltransferase family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26386.1.S1_a_at--41--2011Chr04:33769121..33769145 (25 bp)
ACTCAGTTGTCTGTGGAGGGTCCTA
LOC_Os04g57020
Os.26386.1.S1_a_at--300--5971Chr04:33769197..33769221 (25 bp)
GAGAAGAAACACTGCCTGATCAACT
LOC_Os04g57020
Os.26386.1.S1_a_at--423--4211Chr04:33769270..33769294 (25 bp)
CCCCATAAGGGACGCTGTTTCAGAG
LOC_Os04g57020
Os.26386.1.S1_a_at--127--3671Chr04:33769564..33769584 (21 bp)
CTTAATGGGATGTTCCAGCGCCTAT
LOC_Os04g57020
Os.26386.1.S1_a_at--1087--9211Chr04:33769573..33769597 (25 bp)
TCCAGCGCCTATTCATGATTTCTTA
LOC_Os04g57020
Os.26386.1.S1_a_at--488--491Chr04:33769986..33770010 (25 bp)
ATCTGGAGCACCTGATGTCCTAACA
LOC_Os04g57020
Os.26386.1.S1_a_at--160--8791Chr04:33770125..33770149 (25 bp)
TGTTCTTCTGTTCAGCCACTTTTCA
LOC_Os04g57020
Os.26386.1.S1_a_at--1126--3311Chr04:33770141..33770165 (25 bp)
CACTTTTCACGCTTGCACATACATA
LOC_Os04g57020
Os.26386.1.S1_a_at--680--7291Chr04:33770175..33770199 (25 bp)
GTGCGTAACAGCATCCACTTGAATG
LOC_Os04g57020
Os.26386.1.S1_a_at--1079--6471Chr04:33770200..33770224 (25 bp)
GATTAACTTACCTCCTTTCTTGTGA
LOC_Os04g57020
Os.26386.1.S1_a_at--91--1011Chr04:33770252..33770276 (25 bp)
AGGATTTGTTATGGCTGTCAGCTCA
LOC_Os04g57020
Target Sequence 
ACTCAGTTGTCTGTGGAGGGTCCTATTAGGATGAAAGAGGAATATGTCGAGGGCCTAATAGAGATCCCTAGGATCAGAGA
AGAAACACTGCCTGATCAACTAAAGGGTTTCTTTGGACAAACTGCAGGTGCTCTGCAACAACTCCCTGCCCCCATAAGGG
ACGCTGTTTCAGAGGGGATTAAATTGCCACTTAATGGGATGTTCCAGCGCCTATTCATGATTTCTTACTTGGATGAGGAA
ATACTGATTATCAGAGATGCATCTGGAGCACCTGATGTCCTAACAAGATTGGAAGGGCCACAGCCAAATTCAATTGATGG
CACATCAGACGCAGTGCTGTCAGAATATGAAAGCTAGTGTTAATTGGGTGCACTAATTAGAACGTCGTGATTAGTTTTTT
GTTCTTCTGTTCAGCCACTTTTCACGCTTGCACATACATAATAACTGTAGTGCGTAACAGCATCCACTTGAATGGATTAA
CTTACCTCCTTTCTTGTGAGCAGAGTACATACTGATACTGCTCTTCAGGATTTGTTATGGCTGTCAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26386.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis