Browse Element(s) Details


Os.27960.1.S1_a_at

Description gb:AK121066.1
DB_XREF= gi:37990689
TID=Os.27960.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060D18, full insert sequence.
FL= gb:AK105296.1 gb:AK121066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0422010/11HEAT repeat family protein, expressed
LOC_Os12g0403010/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04170Os.49766.1.S1_at11/1111+1690862..1693286Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os11g04174Os.7704.1.S1_at10/1111+1693474..1695093expressed protein
LOC_Os11g04180Os.13586.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g04180Os.11628.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g04190Os.50938.1.S1_at11/1111+1701229..1704478Auxin Efflux Carrier family protein, expressed
LOC_Os11g04200Os.54231.1.S1_at4/1111+1706762..1711766Mpp10 protein, expressed
LOC_Os11g04210Os.17868.1.S1_at10/1111+1714057..1717595Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os11g04220Os.27960.1.S1_a_at10/1111+1717965..1734148HEAT repeat family protein, expressed
LOC_Os11g04230OsAffx.30810.1.S1_s_at1/1111+1737841..1740887transcription initiation factor IIE, putative
LOC_Os11g04240Os.48585.1.S1_at11/1111+1743100..1747825transcription initiation factor IIE, alpha subunit, putative, expressed
LOC_Os11g04280OsAffx.30811.2.S1_at11/1111+1751235..1751891Zinc finger, C3HC4 type family protein
LOC_Os11g04270OsAffx.6990.1.S1_at9/1111+1752627..1754453hypothetical protein
LOC_Os11g04260OsAffx.6989.1.S1_at11/1111+1755947..1757800hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27960.1.S1_a_at--810--2312Chr12:1681619..1681643 (25 bp)
AAAGGTGCGCAGGTACTGTCTGGTT
LOC_Os12g04030
Os.27960.1.S1_a_at--1061--7172Chr12:1681602..1681626 (25 bp)
GTCTGGTTGGTCTCACTTACAATGT
LOC_Os12g04030
Os.27960.1.S1_a_at--705--10452Chr12:1680870..1680894 (25 bp)
TTACCCACCTTCTTGGTGATCAGAA
LOC_Os12g04030
Os.27960.1.S1_a_at--483--7352Chr12:1680754..1680778 (25 bp)
GTGAATACACTGTCTGGCGCAGCAA
LOC_Os12g04030
Os.27960.1.S1_a_at--1049--6252Chr12:1680500..1680524 (25 bp)
GATGGGCCAACCTGACTTAATATAC
LOC_Os12g04030
Os.27960.1.S1_a_at--345--7972Chr12:1680467..1680491 (25 bp)
GGATCTAGCTAACTATCAGGCTGCT
LOC_Os12g04030
Os.27960.1.S1_a_at--264--412Chr12:1680453..1680477 (25 bp)
ATCAGGCTGCTATCAATTCCAAGAG
LOC_Os12g04030
Os.27960.1.S1_a_at--1044--7672Chr12:1680415..1680439 (25 bp)
GGGTTTTCCAAGATAGCCAAGCAAG
LOC_Os12g04030
Os.27960.1.S1_a_at--916--9052Chr12:1680366..1680390 (25 bp)
TGCATACCTTAATTCCCAGGCTTGT
LOC_Os12g04030
Os.27960.1.S1_a_at--9--4352Chr12:1680351..1680375 (25 bp)
CCAGGCTTGTCCGTTACCAATATGA
LOC_Os12g04030
Os.27960.1.S1_a_at--593--5491NONE
GAACATCCAGGATTCTATGGCACAC
NONE
Target Sequence 
AAAGGTGCGCAGGTACTGTCTGGTTGGTCTCACTTACAATGTACTGTGGTCAGCATCCAAAGATCCTNGAACTACTTCCA
CAAATTCAGGAAGCCCTTACCCACCTTCTTGGTGATCAGAATGATCTTACACAAGATCTGGCATCCCAAGGCATGAGTAT
TGTATATGAGCTTGGTGATGCATCTATGAAGGAGCAGCTGGTTCATGCTCTNGTGAATACACTGTCTGGCGCAGCAAAAA
AGAAAAGGGCCATCAAGCTGATGGANGATTCAGAGGTTTTTCAAGAAGGAACTATTGGCAATAATCCTACTGGAGGAAAG
CTTAGCACATACAAGGAACTTTGTAGCCTTGCCAACGAGATGGGCCAACCTGACTTAATATACAAGTTTATGGATCTAGC
TAACTATCAGGCTGCTATCAATTCCAAGAGGGGNNNTGCTTTTGGGTTTTCCAAGATAGCCAAGCAAGCTGGTGAGGCAC
TTCAGCCTCATCTGCATACCTTAATTCCCAGGCTTGTCCGTTACCAATATGATCCTGATAAGAACATCCAGGATTCTATG
GCACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27960.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis