Browse Element(s) Details


Os.49766.1.S1_at

Description gb:AF319480.1
DB_XREF= gi:33340239
GEN=CK1
TID=Os.49766.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49766 (NCBI UniGene Cluster)
DEF=Oryza sativa calcium-dependent calmodulin-independent protein kinase (CK1) mRNA, complete cds.
PROD=calcium-dependent calmodulin-independent proteinkinase
FL= gb:AF319480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0417011/11Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os12g039703/11Calcium-dependent protein kinase, isoform 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04104Os.18177.1.S1_at11/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04104Os.9752.2.S1_x_at7/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04104Os.9752.3.S1_x_at6/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04120OsAffx.30808.1.S1_at11/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.30808.1.S1_x_at11/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.30808.2.S1_x_at2/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.23391.1.S1_at1/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.27782.1.S1_at1/1111+1669896..1671817hypothetical protein
LOC_Os11g04130OsAffx.30809.1.S1_x_at11/1111+1673387..1673715nodulin MtN21 family protein, putative
LOC_Os11g04140Os.53105.1.S1_at6/1111+1676806..1678456Integral membrane protein DUF6 containing protein
LOC_Os11g04150OsAffx.19478.1.S1_at11/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_s_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04160Os.53234.1.S1_at3/1111+1688435..16903414'-phosphopantetheinyl transferase superfamily protein
LOC_Os11g04170Os.49766.1.S1_at11/1111+1690862..1693286Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os11g04174Os.7704.1.S1_at10/1111+1693474..1695093expressed protein
LOC_Os11g04180Os.13586.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g04180Os.11628.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g04190Os.50938.1.S1_at11/1111+1701229..1704478Auxin Efflux Carrier family protein, expressed
LOC_Os11g04200Os.54231.1.S1_at4/1111+1706762..1711766Mpp10 protein, expressed
LOC_Os11g04210Os.17868.1.S1_at10/1111+1714057..1717595Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os11g04220Os.27960.1.S1_a_at10/1111+1717965..1734148HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0007165biological_processsignal transduction
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49766.1.S1_at--1007--971Chr11:1692530..1692554 (25 bp)
AGGAGTTCGTCACCGCGACAGTGCA
LOC_Os11g04170
Os.49766.1.S1_at--571--5952Chr12:1648968..1648992 (25 bp)
GAGAAGAGCACCTTTACACGGCATT
LOC_Os12g03970
Os.49766.1.S1_at--24--9872Chr12:1648982..1649006 (25 bp)
TACACGGCATTCCAGTACTTTGACA
LOC_Os12g03970
Os.49766.1.S1_at--441--2892Chr12:1649143..1649167 (25 bp)
AAGGGTTATACGACGCCAACGAGAT
LOC_Os12g03970
Os.49766.1.S1_at--147--912Chr12:1649394..1649418 (25 bp)
AGGCGAGATCTAGTTCTATAGCGAA
NONE
Os.49766.1.S1_at--773--1092Chr12:1649435..1649459 (25 bp)
AGTGGCTGGTTTGTGCACAATTTCA
NONE
Os.49766.1.S1_at--603--9632Chr12:1649530..1649554 (25 bp)
TCAGGTTGGGCTCAGGTTCATGTTT
NONE
Os.49766.1.S1_at--319--9632Chr12:1649547..1649571 (25 bp)
TCATGTTTGGTCTTGCACATTGTCC
NONE
Os.49766.1.S1_at--569--3592Chr12:1649564..1649588 (25 bp)
CATTGTCCTGGCTAGTTGTTGGGAA
NONE
Os.49766.1.S1_at--156--5352Chr12:1649586..1649610 (25 bp)
GAAGATGGATTTGTTCCTTCTTTCT
NONE
Os.49766.1.S1_at--179--10312Chr12:1649606..1649630 (25 bp)
TTTCTGTTCAGTCATCTTGTACACT
NONE
Target Sequence 
AGGAGTTCGTCACCGCGACAGTGCACATGAACAAAATGGATCGAGAAGAGCACCTTTACACGGCATTCCAGTACTTTGAC
AAGGATAATAGTGGGTACATCACAAAGGAAGAGCTCGAGCAAGCCTTGAAGGAACAAGGGTTATACGACGCCAACGAGAT
CAAGGATGTCATCNNANNNNNNNNNNNNANNNANGATGGGNGGATAGATTATTCAGAGTTTGTGGCCATGATGAGGAAAG
GATCAGGCTGTGCAGAAGCAACAAACCCAAAGAAGAAGAGGCGAGATCTAGTTCTATAGCGAAACAGGGTAGTGTGTATA
GTGGCTGGTTTGTGCACAATTTCAAACATGATGTGCATTTACCACGAGTGTAATGTATACAATGGAATTTTCTTTCCAAT
TGCATATTTNCATTTCAGGTTGGGCTCAGGTTCATGTTTGGTCTTGCACATTGTCCTGGCTAGTTGTTGGGAAGATGGAT
TTGTTCCTTCTTTCTGTTCAGTCATCTTGTACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis