Browse Element(s) Details


Os.53234.1.S1_at

Description gb:AK071502.1
DB_XREF= gi:32981525
TID=Os.53234.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023089C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089C15, full insert sequence.
FL= gb:AK071502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0396011/114'-phosphopantetheinyl transferase superfamily protein, expressed
LOC_Os11g041603/114'-phosphopantetheinyl transferase superfamily protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03920OsAffx.30809.1.S1_x_at7/1112+1621020..1625198Nodulin, putative
LOC_Os12g03920Os.53105.1.S1_at5/1112+1621020..1625198Nodulin, putative
LOC_Os12g03930NANA12+1627755..1628672retrotransposon protein, putative, unclassified
LOC_Os12g03940OsAffx.19477.1.S1_at11/1112+1629993..1630617hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_s_at9/1112+1634122..1641673hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_at9/1112+1634122..1641673hypothetical protein
LOC_Os12g03960Os.53234.1.S1_at11/1112+1645425..16469714'-phosphopantetheinyl transferase superfamily protein, expressed
LOC_Os12g03970Os.49766.1.S1_at3/1112+1647300..1649414Calcium-dependent protein kinase, isoform 2, putative
LOC_Os12g03980Os.7704.1.S1_at5/1112+1650422..1651037hypothetical protein
LOC_Os12g03990Os.11628.1.S1_at5/1112+1651554..1654465Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g03990Os.13586.1.S1_at4/1112+1651554..1654465Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g04000Os.50938.1.S1_at10/1112+1657206..1659737Auxin efflux carrier component 3, putative, expressed
LOC_Os12g04010Os.54231.1.S1_at10/1112+1662836..1667934Mpp10 protein, expressed
LOC_Os12g04020Os.17868.1.S1_at11/1112+1670493..1674168Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53234.1.S1_at--197--6072Chr12:1646175..1646305 (25 bp)
GAGTTCTACAGGTATTGGTGTCTTA
LOC_Os12g03960
Os.53234.1.S1_at--811--1572Chr12:1646322..1646346 (25 bp)
AGCTACAGGTGCTGGCGTTGGATTC
LOC_Os12g03960
Os.53234.1.S1_at--153--8571Chr12:1646340..1646364 (25 bp)
TGGATTCGGGCTGCAACGTTTGGAA
LOC_Os12g03960
Os.53234.1.S1_at--833--3111Chr12:1646386..1646410 (25 bp)
AATATTTCTCTCTGTATTGATGGAG
LOC_Os12g03960
Os.53234.1.S1_at--44--651Chr12:1646188..1646588 (25 bp)
ATGCATTTGGCATCCATTGCGAAAG
LOC_Os12g03960
Os.53234.1.S1_at--936--5372Chr12:1646681..1646705 (25 bp)
GAAGAAGCTTTCACTCTATTGACAG
LOC_Os12g03960
Os.53234.1.S1_at--219--7531Chr12:1646705..1646729 (25 bp)
GTGGAACACCTTATACAGTTACATG
LOC_Os12g03960
Os.53234.1.S1_at--1147--812Chr12:1646735..1646759 (25 bp)
ATGGTCTTCTTGAATTTTGCGGTGA
LOC_Os12g03960
Os.53234.1.S1_at--743--4671Chr12:1646753..1646777 (25 bp)
GCGGTGACATACTAATGCAGGACTA
LOC_Os12g03960
Os.53234.1.S1_at--395--2332Chr12:1646842..1646866 (25 bp)
AAAGTATCCTTGTATTTGCTCTCGG
LOC_Os12g03960
Os.53234.1.S1_at--104--8791Chr12:1646894..1646918 (25 bp)
TGTTAGGGCCTGTTTTTTCTTTCAT
LOC_Os12g03960
Target Sequence 
GAGTTCTACAGGTATTGGTGTCTTAAAGAAGCATTTGTCAAAGCTACAGGTGCTGGCGTTGGATTCGGGCTGCAACGTTT
GGAATTCCACCATATGAATTGGACTAATATTTCTCTCTGTATTGATGGAGAAGAGGCTAGGAAATGGATGTTTTGGCTTT
TCAAGATTGATGAAATGCATTTGGCATCCATTGCGAAAGGGCATCCAGAGGATGCTATTGACAGCTTCAGGAGAACATTA
TCTGATGTGGTTATTCAGGAGGGAGAATTGCATACGGCAATAGAAATTCCAGAAGAAGCTTTCACTCTATTGACAGTGGA
ACACCTTATACAGTTACATGATTAAATGGTCTTCTTGAATTTTGCGGTGACATACTAATGCAGGACTAAAATCAACAAAT
TGTGAGTGTATCCTGAAAGTTAAAATACATACATAGCACACCAAAATTAGGAAAAGTATCCTTGTATTTGCTCTCGGTGC
TTCTGCAGAAATGAGAGCTTAAGATGTTAGGGCCTGTTTTTTCTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis