Browse Element(s) Details


Os.27960.1.S2_at

Description gb:AK105296.1
DB_XREF= gi:32990505
TID=Os.27960.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G12, full insert sequence.
FL= gb:AK105296.1 gb:AK121066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g040305/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03970Os.49766.1.S1_at3/1112+1647300..1649414Calcium-dependent protein kinase, isoform 2, putative
LOC_Os12g03980Os.7704.1.S1_at5/1112+1650422..1651037hypothetical protein
LOC_Os12g03990Os.11628.1.S1_at5/1112+1651554..1654465Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g03990Os.13586.1.S1_at4/1112+1651554..1654465Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g04000Os.50938.1.S1_at10/1112+1657206..1659737Auxin efflux carrier component 3, putative, expressed
LOC_Os12g04010Os.54231.1.S1_at10/1112+1662836..1667934Mpp10 protein, expressed
LOC_Os12g04020Os.17868.1.S1_at11/1112+1670493..1674168Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os12g04030Os.27960.1.S1_a_at10/1112+1673702..1681675HEAT repeat family protein, expressed
LOC_Os12g04030Os.27960.1.S2_at5/1112+1673702..1681675HEAT repeat family protein, expressed
LOC_Os12g04040NANA12+1696203..1699494retrotransposon protein, putative, unclassified
LOC_Os12g04050NANA12+1700122..1705935retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27960.1.S2_at--63--1031Chr12:1674953..1674977 (25 bp)
AGGTGGGTTATTCTCGCAAATTGGA
LOC_Os12g04030
Os.27960.1.S2_at--1034--1631Chr12:1674909..1674933 (25 bp)
AGCGTTTCATTACTGGTTGCATCCG
LOC_Os12g04030
Os.27960.1.S2_at--6--5612Chr12:1674881..1674905 (25 bp)
GAAATTCTGAAGCTTTGCATCCGCA
LOC_Os12g04030
Os.27960.1.S2_at--636--9171Chr12:1674835..1674859 (25 bp)
TGCCGCTGTTACGATTTAATGTTTT
LOC_Os12g04030
Os.27960.1.S2_at--247--611NONE
ATGCCCACACATGTTTGCGCAACTG
NONE
Os.27960.1.S2_at--249--8431NONE
GGCCAAACACGCTTAACCTTAGACT
NONE
Os.27960.1.S2_at--330--1751NONE
ACCTTAGACTCTCATAGCTCTTTGG
NONE
Os.27960.1.S2_at--486--1571NONE
AGCTCTTTGGAGATCGGCTTCCAGA
NONE
Os.27960.1.S2_at--401--231NONE
ATATTAAGCTTTAGACCGGGATGTC
NONE
Os.27960.1.S2_at--581--3231NONE
CAAGACCTTATTAGTACCCGAGAGT
NONE
Os.27960.1.S2_at--421--6992Chr12:1674184..1674206 (23 bp)
GTACCCGAGAGTGATACTTATGCTG
LOC_Os12g04030
Target Sequence 
AGGTGGGTTATTCTCGCAAATTGGAATCACCATGTAATAGGATGAGCGTTTCATTACTGGTTGCATCCGAAGGAAATTCT
GAAGCTTTGCATCCGCAACCCACTTGTGCAACATGCCNTGCCGCTGTTACGATTTAATGTTTTTCTCCCAGAAAGTAGTG
GTGAGCTACCAGAGATTGGTTTCATGATTCTTTAAAGTCTCAACTTCTCCTAGACCGGGCCCGCTTACATCCGACAGCTT
TCATAGGTCATAAACTGCCCTCACAGACCAACACATGCCCACACATGTTTGCGCAACTGCGACACACGCGCCCGTGAAAA
CTCGGGAAGAATTTCCCGATCGGTCACCCATCCCTAAATTGCTCCAGGCCAAACACGCTTAACCTTAGACTCTCATAGCT
CTTTGGAGATCGGCTTCCAGAAAAAAAGTTACAACTTGTTGATATGAGTATTCTATTAATCATATTAAGCTTTAGACCGG
GATGTCAAAAAAAGGAACCAAGACCTTATTAGTACCCGAGAGTGATACTTATGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27960.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis