Browse Element(s) Details


Os.28087.1.S1_at

Description gb:AK102640.1
DB_XREF= gi:32987849
TID=Os.28087.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative sugar transporter (OSJNBb0064P21.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033100A10, full insert sequence.
FL= gb:AK067391.1 gb:AK102640.1 gb:AK065191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g394409/11hexose transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39420Os.8477.1.S1_a_at11/1110+20697783..20702541Calcium-dependent protein kinase, isoform 1, putative, expressed
LOC_Os10g39430Os.26552.1.S1_at11/1110+20706557..20709446expressed protein
LOC_Os10g39434NANA10+20709917..20711620hypothetical protein
LOC_Os10g39440Os.28087.1.S1_s_at11/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39440Os.49153.1.A1_x_at11/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39440Os.28087.1.S1_at9/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39450Os.51573.1.S1_x_at2/1110+20725755..20726522Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39460Os.46866.1.S1_at11/1110+20728433..20731616PPR986-12, putative, expressed
LOC_Os10g39470OsAffx.1887.1.S1_x_at11/1110+20736620..20745261expressed protein
LOC_Os10g39470Os.7121.1.S1_at11/1110+20736620..20745261expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005337molecular_functionnucleoside transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28087.1.S1_at--96--9571Chr10:20722466..20722490 (25 bp)
TCTTCTCTGTCGGAGCAAAGCAGGC
LOC_Os10g39440
Os.28087.1.S1_at--413--3651Chr10:20722467..20722491 (25 bp)
CTTCTCTGTCGGAGCAAAGCAGGCC
LOC_Os10g39440
Os.28087.1.S1_at--313--10591Chr10:20722468..20722492 (25 bp)
TTCTCTGTCGGAGCAAAGCAGGCCA
LOC_Os10g39440
Os.28087.1.S1_at--284--4391Chr10:20722489..20722513 (25 bp)
GCCAAGGAGGACTAGTTGCTCGGAT
LOC_Os10g39440
Os.28087.1.S1_at--892--6331Chr10:20722910..20722934 (25 bp)
GATGCTTGGATTTCATCAAGTACTA
LOC_Os10g39440
Os.28087.1.S1_at--612--611Chr10:20722911..20722935 (25 bp)
ATGCTTGGATTTCATCAAGTACTAA
LOC_Os10g39440
Os.28087.1.S1_at--1130--9051Chr10:20722912..20722935 (24 bp)
TGCTTGGATTTCATCAAGTACTAAC
LOC_Os10g39440
Os.28087.1.S1_at--465--4931Chr10:20722913..20722935 (23 bp)
GCTTGGATTTCATCAAGTACTAACT
LOC_Os10g39440
Os.28087.1.S1_at--1021--10811Chr10:20722915..20722935 (21 bp)
TTGGATTTCATCAAGTACTAACTTA
LOC_Os10g39440
Os.28087.1.S1_at--30--7951Chr10:20722917..20723354 (25 bp)
GGATTTCATCAAGTACTAACTTAAA
NONE
Os.28087.1.S1_at--141--6531Chr10:20722918..20723355 (25 bp)
GATTTCATCAAGTACTAACTTAAAA
NONE
Target Sequence 
TCTTCTCTGTCGGAGCAAAGCAGGCCAAGGAGGACTAGTTGCTCGGATCAAGTGATCAATCAGATTGCTGGTGGTAATTT
TGTTGCTTCCAAATCGCGCTGCGGGTTAAACCTGTGATGGATGCTTTGTTAAAGAATCTTGGAAGAGATCAAAATGCAGT
GAGCCTAAAGAGATGATTTGGNTGTACATCATGAGGCTGAATCCTGTCGTAGACTGGATTTTGGAGCTTAGGATATGTAG
ATCATCTGTTCCTTTTGGTTTGGTCATTTTCCATTTGTGTTTCTTTGGAATTCTTCTCCCTGTAACTAGTGGTCTATCAC
AGTTGTGTTACTGGTTTTGCCTTACTCTTGAGTTTGTTTTCTTCTCTCGGTTGTGAGTTNTGAATATTAGCATAGCCGAG
TACTAGTTCTGAATTGGTTTCCTCTCTGCTGAACATCNTTCATNGATGCTTGGATTTCATCAAGTACTAACTTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis