Browse Element(s) Details


Os.26552.1.S1_at

Description gb:AK120628.1
DB_XREF= gi:37990251
TID=Os.26552.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0064P21.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153C17, full insert sequence.
FL= gb:AK120628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3943011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39390OsAffx.7934.1.S1_at11/1110+20682312..20683529Eukaryotic aspartyl protease family protein
LOC_Os10g39400Os.46491.1.S1_at11/1110+20686895..20688661expressed protein
LOC_Os10g39410Os.12348.1.S1_at11/1110+20689611..20690218Histone H4, putative, expressed
LOC_Os10g39414OsAffx.30725.1.S1_at11/1110+20690696..20692440transposon protein, putative, unclassified
LOC_Os10g39414OsAffx.30725.5.S1_x_at3/1110+20690696..20692440transposon protein, putative, unclassified
LOC_Os10g39420Os.8477.1.S1_a_at11/1110+20697783..20702541Calcium-dependent protein kinase, isoform 1, putative, expressed
LOC_Os10g39430Os.26552.1.S1_at11/1110+20706557..20709446expressed protein
LOC_Os10g39434NANA10+20709917..20711620hypothetical protein
LOC_Os10g39440Os.28087.1.S1_s_at11/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39440Os.49153.1.A1_x_at11/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39440Os.28087.1.S1_at9/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39450Os.51573.1.S1_x_at2/1110+20725755..20726522Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39460Os.46866.1.S1_at11/1110+20728433..20731616PPR986-12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009902biological_processchloroplast relocation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26552.1.S1_at--651--931Chr10:20708855..20708879 (25 bp)
AGGCAGAAGCTGACGGCAATGCAGT
LOC_Os10g39430
Os.26552.1.S1_at--450--2611Chr10:20709035..20709059 (25 bp)
AACCCGGATGTCAGAGTTGGCGCCA
LOC_Os10g39430
Os.26552.1.S1_at--172--4491Chr10:20709106..20709130 (25 bp)
GCCGGGATGGCACGTTACACAATTT
LOC_Os10g39430
Os.26552.1.S1_at--62--9851Chr10:20709121..20709145 (25 bp)
TACACAATTTGTAGGTTTGCATGAT
LOC_Os10g39430
Os.26552.1.S1_at--1076--4971Chr10:20709139..20709163 (25 bp)
GCATGATATGTATGCAAACTCCAGT
LOC_Os10g39430
Os.26552.1.S1_at--270--7011Chr10:20709162..20709186 (25 bp)
GTACTCCCCGTACTGGTACATTACA
LOC_Os10g39430
Os.26552.1.S1_at--633--10391Chr10:20709209..20709233 (25 bp)
TTATCTGAAGTCTGTTTGAAACGCA
LOC_Os10g39430
Os.26552.1.S1_at--324--3152Chr10:20709266..20709290 (25 bp)
AATTCCTGCATTTGAAACAGGCCTT
LOC_Os10g39430
Os.26552.1.S1_at--1008--2491Chr10:20709281..20709305 (25 bp)
AACAGGCCTTGTGTTGTATGTGTAG
LOC_Os10g39430
Os.26552.1.S1_at--244--6931Chr10:20709296..20709320 (25 bp)
GTATGTGTAGGCAGTGTAGCCAAGT
LOC_Os10g39430
Os.26552.1.S1_at--261--6971Chr10:20709311..20709335 (25 bp)
GTAGCCAAGTTGTCAGTGTGTTACT
LOC_Os10g39430
Target Sequence 
AGGCAGAAGCTGACGGCAATGCAGTGGGCGCTCGCGCACGGGCCGGCGCGCGCCGCGGGCAGGAGAGCGCGGACGCCGAC
GACGACGACGACGCCGTCGTCTCAGGCGAGGCAGCGGCCGGACGTCGTGTGGAGCTTGTCGTCGCGGGTGCTCGCCGGGA
TGTGGCTCAAGACGGTGCGCAACCCGGATGTCAGAGTTGGCGCCACCGCCGCCGGCAGCGGCGGCGGCGGCAACTGAGAC
GGCGCCGGCCGGCCGGGATGGCACGTTACACAATTTGTAGGTTTGCATGATATGTATGCAAACTCCAGTACTCCCCGTAC
TGGTACATTACATAAGTATTAGCATAAAATCGTTTTATCTGAAGTCTGTTTGAAACGCAGGAATTTTATAGAATTTTTAG
AAATCAGATAAAATTCCTGCATTTGAAACAGGCCTTGTGTTGTATGTGTAGGCAGTGTAGCCAAGTTGTCAGTGTGTTAC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis