Browse Element(s) Details


OsAffx.30725.1.S1_at

Description tigr:9638.m03561
TID=OsAffx.30725.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative protein phosphatase 2A subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3941411/11transposon protein, putative, unclassified
LOC_Os07g233544/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39350OsAffx.30724.1.S1_at11/1110+20667693..20668883Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39360OsAffx.7936.1.S1_at11/1110+20674266..20675525Eukaryotic aspartyl protease family protein
LOC_Os10g39370OsAffx.18579.1.S1_at11/1110+20676365..20676948hypothetical protein
LOC_Os10g39380OsAffx.18580.1.S1_at11/1110+20679018..20680139Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39390OsAffx.7934.1.S1_at11/1110+20682312..20683529Eukaryotic aspartyl protease family protein
LOC_Os10g39400Os.46491.1.S1_at11/1110+20686895..20688661expressed protein
LOC_Os10g39410Os.12348.1.S1_at11/1110+20689611..20690218Histone H4, putative, expressed
LOC_Os10g39414OsAffx.30725.1.S1_at11/1110+20690696..20692440transposon protein, putative, unclassified
LOC_Os10g39414OsAffx.30725.5.S1_x_at3/1110+20690696..20692440transposon protein, putative, unclassified
LOC_Os10g39420Os.8477.1.S1_a_at11/1110+20697783..20702541Calcium-dependent protein kinase, isoform 1, putative, expressed
LOC_Os10g39430Os.26552.1.S1_at11/1110+20706557..20709446expressed protein
LOC_Os10g39434NANA10+20709917..20711620hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30725.1.S1_at--751--9571Chr10:20690998..20691022 (25 bp)
TCTTCGCCTTCGAGGACTCGCGCGA
LOC_Os10g39414
OsAffx.30725.1.S1_at--1076--7212Chr12:23881898..23882078 (25 bp)
GTCGAGCGCGCGTTTATGCAGCGCA
NONE
OsAffx.30725.1.S1_at--1079--4131Chr10:20691078..20691102 (25 bp)
CGCGCGTTTATGCAGCGCATCATGG
LOC_Os10g39414
OsAffx.30725.1.S1_at--990--8251Chr10:20691315..20691339 (25 bp)
GGCAGCATCCGTCGCTCGAGACATC
LOC_Os10g39414
OsAffx.30725.1.S1_at--1029--1531Chr10:20691318..20691342 (25 bp)
AGCATCCGTCGCTCGAGACATCTTC
LOC_Os10g39414
OsAffx.30725.1.S1_at--183--1291Chr10:20691404..20691428 (25 bp)
AGATCGTCGAGATCCACTGTCTGCT
LOC_Os10g39414
OsAffx.30725.1.S1_at--570--1291Chr10:20691413..20691437 (25 bp)
AGATCCACTGTCTGCTCCCGGATTG
LOC_Os10g39414
OsAffx.30725.1.S1_at--391--3752Chr10:20691460..20691484 (25 bp)
CTCACAGGTTTGTGTGCTTCTTCAT
LOC_Os10g39414
OsAffx.30725.1.S1_at--996--1012Chr10:20691465..20691489 (25 bp)
AGGTTTGTGTGCTTCTTCATCCATT
LOC_Os10g39414
OsAffx.30725.1.S1_at--492--10512Chr10:20691480..20691504 (25 bp)
TTCATCCATTTTCACAATCGATTTC
LOC_Os10g39414
OsAffx.30725.1.S1_at--594--4313Chr12:23882343..23882367 (25 bp)
CCATTTTCACAATCGATTTCATTTC
NONE
Target Sequence 
TCTTCGCCTTCGAGGACTCGCGCGAGCGCGACCGCCTCAAGTACGTCTACCACCAGCTCTACTCCAAGCTCACCGTCGAG
CGCGCGTTTATGCAGCGCATCATGGCCGCCGCGCTACTCCGGTTCGTCTACGACACGTCCCCGGAGGAGGCCGAGCGCCA
CTGCGGCGTCGGCGAGCTGCTCGAGATCTGCGGCAGCATCATCAACGGCTTCGCCGTGCCACTCAAGGAGGAGCACCGGG
CGTTCATGGCGCGTGTGCTGCTGCCGCTGCACCGGACGCGGTGGGTGCACACGTACCACCGCCAGCTCTCCTACTGCGGC
AGCATCCGTCGCTCGAGACATCTTCCTCCGCCACTGGCCGGCGACCAAATGCCAGAAGGAGGTGCTGCTCATCGACGAGC
TCGAGGAGATCGTCGAGATCCACTGTCTGCTCCCGGATTGCCCGCTGCGTCAGCAGCTGCAGCTCACAGGTTTGTGTGCT
TCTTCATCCATTTTCACAATCGATTTCATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis