Browse Element(s) Details


OsAffx.18579.1.S1_at

Description tigr:9638.m03556
TID=OsAffx.18579.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3937011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39320OsAffx.30721.2.S1_x_at11/1110+20653362..20654603Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.1.S1_at11/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.2.S1_x_at2/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39340OsAffx.30721.2.S1_x_at10/1110+20664132..20665325Eukaryotic aspartyl protease family protein
LOC_Os10g39350OsAffx.30724.1.S1_at11/1110+20667693..20668883Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39360OsAffx.7936.1.S1_at11/1110+20674266..20675525Eukaryotic aspartyl protease family protein
LOC_Os10g39370OsAffx.18579.1.S1_at11/1110+20676365..20676948hypothetical protein
LOC_Os10g39380OsAffx.18580.1.S1_at11/1110+20679018..20680139Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39390OsAffx.7934.1.S1_at11/1110+20682312..20683529Eukaryotic aspartyl protease family protein
LOC_Os10g39400Os.46491.1.S1_at11/1110+20686895..20688661expressed protein
LOC_Os10g39410Os.12348.1.S1_at11/1110+20689611..20690218Histone H4, putative, expressed
LOC_Os10g39414OsAffx.30725.1.S1_at11/1110+20690696..20692440transposon protein, putative, unclassified
LOC_Os10g39414OsAffx.30725.5.S1_x_at3/1110+20690696..20692440transposon protein, putative, unclassified
LOC_Os10g39420Os.8477.1.S1_a_at11/1110+20697783..20702541Calcium-dependent protein kinase, isoform 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18579.1.S1_at--855--2751Chr10:20676410..20676434 (25 bp)
AAGACACCTTGCATTCTGAAACACC
LOC_Os10g39370
OsAffx.18579.1.S1_at--82--3851Chr10:20676425..20676449 (25 bp)
CTGAAACACCCATGCACTGGTGCAT
LOC_Os10g39370
OsAffx.18579.1.S1_at--926--1951Chr10:20676440..20676464 (25 bp)
ACTGGTGCATGGATGCTCAGACAAA
LOC_Os10g39370
OsAffx.18579.1.S1_at--131--1431Chr10:20676464..20676488 (25 bp)
AGAACTTCCACAAAAGCCGCATCAC
LOC_Os10g39370
OsAffx.18579.1.S1_at--767--9691Chr10:20676485..20676676 (25 bp)
TCACACTGCCCTACTCGAGGAAAAA
LOC_Os10g39370
OsAffx.18579.1.S1_at--397--2931Chr10:20676781..20676805 (25 bp)
AAGGACAGTGACTTGATCTCTGCTG
LOC_Os10g39370
OsAffx.18579.1.S1_at--826--6411Chr10:20676795..20676819 (25 bp)
GATCTCTGCTGTACTGGATAACCAA
LOC_Os10g39370
OsAffx.18579.1.S1_at--150--6471Chr10:20676811..20676835 (25 bp)
GATAACCAAAATCCCCTGAATCATG
LOC_Os10g39370
OsAffx.18579.1.S1_at--981--2351Chr10:20676839..20676863 (25 bp)
AAACCAAGGCGCCATTATCCACTAT
LOC_Os10g39370
OsAffx.18579.1.S1_at--149--9732Chr10:20676863..20676887 (25 bp)
TAATTGTGGCCAGAGGGAGTACCTT
LOC_Os10g39370
OsAffx.18579.1.S1_at--721--8031Chr10:20676878..20676902 (25 bp)
GGAGTACCTTTGTTGCTCGGAGAAA
LOC_Os10g39370
Target Sequence 
AAGACACCTTGCATTCTGAAACACCCATGCACTGGTGCATGGATGCTCAGACAAAGAACTTCCACAAAAGCCGCATCACA
CTGCCCTACTCGAGGAAAAAGAGCATCTAAGGACAGTGACTTGATCTCTGCTGTACTGGATAACCAAAATCCCCTGAATC
ATGGACAAACCAAGGCGCCATTATCCACTATAATTGTGGCCAGAGGGAGTACCTTTGTTGCTCGGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis