Browse Element(s) Details


OsAffx.30721.1.S1_at

Description tigr:9638.m03552
TID=OsAffx.30721.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative nucleoid DNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3933011/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39280OsAffx.21973.1.S1_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39280OsAffx.20167.1.S1_x_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39300Os.6792.1.S1_at7/1110+20641556..20642957Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39310OsAffx.30721.5.S1_at11/1110+20649378..20650526Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39320OsAffx.30721.2.S1_x_at11/1110+20653362..20654603Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.1.S1_at11/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.2.S1_x_at2/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39340OsAffx.30721.2.S1_x_at10/1110+20664132..20665325Eukaryotic aspartyl protease family protein
LOC_Os10g39350OsAffx.30724.1.S1_at11/1110+20667693..20668883Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39360OsAffx.7936.1.S1_at11/1110+20674266..20675525Eukaryotic aspartyl protease family protein
LOC_Os10g39370OsAffx.18579.1.S1_at11/1110+20676365..20676948hypothetical protein
LOC_Os10g39380OsAffx.18580.1.S1_at11/1110+20679018..20680139Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39390OsAffx.7934.1.S1_at11/1110+20682312..20683529Eukaryotic aspartyl protease family protein
LOC_Os10g39400Os.46491.1.S1_at11/1110+20686895..20688661expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30721.1.S1_at--1148--4531Chr10:20661981..20662005 (25 bp)
GCCCGGCGACGACATGAGCCAATAT
LOC_Os10g39330
OsAffx.30721.1.S1_at--308--8931Chr10:20661995..20662019 (25 bp)
TGAGCCAATATTACCCGATACAATT
LOC_Os10g39330
OsAffx.30721.1.S1_at--565--10811Chr10:20662079..20662103 (25 bp)
TTGTCCAGACCTTGGCGCCGATGAG
LOC_Os10g39330
OsAffx.30721.1.S1_at--119--5931Chr10:20662101..20662125 (25 bp)
GAGCTTCCTGGTGGACAGTGCGTAC
LOC_Os10g39330
OsAffx.30721.1.S1_at--853--3451Chr10:20662116..20662140 (25 bp)
CAGTGCGTACCAGGCCCTCAAGAAG
LOC_Os10g39330
OsAffx.30721.1.S1_at--941--6651Chr10:20662182..20662206 (25 bp)
GTTGCAGCCTTTCGACCTTTGCTTC
LOC_Os10g39330
OsAffx.30721.1.S1_at--156--3351Chr10:20662326..20662350 (25 bp)
CACGGTGTGCATGGCGATCCTGAGC
LOC_Os10g39330
OsAffx.30721.1.S1_at--588--851Chr10:20662336..20662360 (25 bp)
ATGGCGATCCTGAGCACGTCGTGGC
LOC_Os10g39330
OsAffx.30721.1.S1_at--402--8111Chr10:20662377..20662401 (25 bp)
GGACGAGAACCTCAACATCCTGGGT
LOC_Os10g39330
OsAffx.30721.1.S1_at--52--9711Chr10:20662388..20662412 (25 bp)
TCAACATCCTGGGTAGCTTGCAGCA
LOC_Os10g39330
OsAffx.30721.1.S1_at--199--8071Chr10:20662413..20662437 (25 bp)
GGAGAACACGCACTTCCTCTTGGAT
LOC_Os10g39330
Target Sequence 
GCCCGGCGACGACATGAGCCAATATTACCCGATACAATTGGACGGGATAAAAGCCGGCGACGCGGCAATCGCGCTGCCGC
CGAGCGGCAACACCGTCCTTGTCCAGACCTTGGCGCCGATGAGCTTCCTGGTGGACAGTGCGTACCAGGCCCTCAAGAAG
GAGGTGACGAAGGCCGTCGGCGCTGCGCCGACGGCGACGCCGTTGCAGCCTTTCGACCTTTGCTTCCCGAAGGCGGGGCT
CAGCAACGCCAGCGCGCCGGACCTGGTGTTCACGTTCCAGCAGGGCGCCGCCGCGTTGACGGTTCCGCCGCCGAAGTACC
TGATCGACGTCGGCGAGGAGAAGGGCACGGTGTGCATGGCGATCCTGAGCACGTCGTGGCTGAACACGACGGCGTTGGAC
GAGAACCTCAACATCCTGGGTAGCTTGCAGCAGGAGAACACGCACTTCCTCTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis