Browse Element(s) Details


Os.6792.1.S1_at

Description gb:AK061277.1
DB_XREF= gi:32971295
TID=Os.6792.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nucleoid DNA binding protein (OSJNBa0040D23.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F01, full insert sequence.
FL= gb:AK061045.1 gb:AK061277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g393007/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g392607/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39230Os.5988.1.S1_at11/1110+20611078..20618279tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os10g39250OsAffx.30720.1.S1_at6/1110+20625347..20626178hypothetical protein
LOC_Os10g39260Os.6792.1.S1_at7/1110+20627200..20628603Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39270OsAffx.30721.3.S1_at11/1110+20631449..20632642Eukaryotic aspartyl protease family protein
LOC_Os10g39280OsAffx.21973.1.S1_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39280OsAffx.20167.1.S1_x_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39300Os.6792.1.S1_at7/1110+20641556..20642957Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39310OsAffx.30721.5.S1_at11/1110+20649378..20650526Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39320OsAffx.30721.2.S1_x_at11/1110+20653362..20654603Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.1.S1_at11/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.2.S1_x_at2/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39340OsAffx.30721.2.S1_x_at10/1110+20664132..20665325Eukaryotic aspartyl protease family protein
LOC_Os10g39350OsAffx.30724.1.S1_at11/1110+20667693..20668883Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6792.1.S1_at--1047--5772Chr10:20642618..20642642 (25 bp)
GACGAACTACCTGCTCGACTACAAG
LOC_Os10g39300
Os.6792.1.S1_at--126--1612Chr10:20642698..20642722 (25 bp)
AGCTGAGCTTGCTGGGAAGCTTGCA
LOC_Os10g39300
Os.6792.1.S1_at--796--9032Chr10:20642780..20642804 (25 bp)
TGCAGACTGCACTAAACTCTCCTAG
LOC_Os10g39300
Os.6792.1.S1_at--1008--9492Chr10:20642797..20642821 (25 bp)
TCTCCTAGCTAATCAATGGCTGCTG
LOC_Os10g39300
Os.6792.1.S1_at--322--4771Chr10:20642815..20642839 (25 bp)
GCTGCTGTGCTGCTACTTAATTACT
LOC_Os10g39300
Os.6792.1.S1_at--1047--4991NONE
GCAGGAGAGTTCAGGCTATATGTAT
NONE
Os.6792.1.S1_at--45--3091Chr10:20642884..20642908 (25 bp)
AATAACGCAGCCATATATGCGGCAT
LOC_Os10g39300
Os.6792.1.S1_at--929--10111Chr10:20642899..20642919 (21 bp)
TATGCGGCATGAGCTGCACGCATGC
LOC_Os10g39300
Os.6792.1.S1_at--378--3851Chr10:20628428..20628549 (25 bp)
CTGCACGCATGCTCATGTTGGTGAA
LOC_Os10g39260
Os.6792.1.S1_at--439--151Chr10:20628567..20628591 (25 bp)
ATTATTATTCTGTGGCGATCTGGCC
LOC_Os10g39260
Os.6792.1.S1_at--793--8471Chr10:20628579..20628603 (25 bp)
TGGCGATCTGGCCTACTTCGATTTC
LOC_Os10g39260
Target Sequence 
GACGAACTACCTGCTCGACTACAAGAACGGCACGGTGTGCCTCGCCATGCTGAGCTCGGCGCGGCTGAACTCGACGACGG
AGCTGAGCTTGCTGGGAAGCTTGCAGCAGGAGAACATCCATTTCCTCTTCGACCTCGACAAGGAGACGCTCTCCTTCGAG
CCTGCAGACTGCACTAAACTCTCCTAGCTAATCAATGGCTGCTGTGCTGCTACTTAATTACTTTCAGGAAGCAGGAGAGT
TCAGGCTATATGTATGTGTACTTCTGAATAACGCAGCCATATATGCGGCATGAGCTGCACGCATGCTCATGTTGGTGAAA
ATAATACTCCCATTCTTATTATTATTCTGTGGCGATCTGGCCTACTTCGATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis