Browse Element(s) Details


OsAffx.20167.1.S1_x_at

Description tigr:9638.m03547
TID=OsAffx.20167.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g220302/11hypothetical protein
LOC_Os10g392801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21990Os.46775.1.S1_at11/113+12578330..12584633PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed
LOC_Os03g22010Os.11561.2.S1_a_at11/113+12590649..12595998Peroxidase 2 precursor, putative, expressed
LOC_Os03g22020Os.12843.1.S1_at11/113+12596935..12598451Peroxidase 52 precursor, putative, expressed
LOC_Os03g22030OsAffx.25188.1.S1_at11/113+12602717..12604692hypothetical protein
LOC_Os03g22030OsAffx.20167.1.S1_x_at2/113+12602717..12604692hypothetical protein
LOC_Os03g22040Os.18531.1.S1_at11/113+12606123..12609182expressed protein
LOC_Os03g22050Os.8095.1.S4_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S3_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S2_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S1_at10/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22060Os.10800.1.S1_at1/113+12621916..12625575Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g22070NANA3+12626045..12627413hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20167.1.S1_x_at--443--9391Chr10:20638494..20638518 (25 bp)
TCGTACCCGTCGTCGTTCATTGCTG
NONE
OsAffx.20167.1.S1_x_at--158--7212Chr10:20638486..20638510 (25 bp)
GTCGTCGTTCATTGCTGTCCGCCGG
NONE
OsAffx.20167.1.S1_x_at--1014--6731Chr10:20638480..20638504 (25 bp)
GTTCATTGCTGTCCGCCGGCTCGGT
NONE
OsAffx.20167.1.S1_x_at--1102--8311Chr10:20638248..20638487 (25 bp)
GGCTCGGTGGCTCCCTGCTCGTCGG
NONE
OsAffx.20167.1.S1_x_at--806--391Chr10:20638362..20638386 (25 bp)
ATCAGCGCAACTCGACAACGAGGGC
NONE
OsAffx.20167.1.S1_x_at--611--8092Chr10:20638244..20638358 (25 bp)
GGAGCCGTCGTCTAGCGTCGGCCAT
NONE
OsAffx.20167.1.S1_x_at--592--9991Chr10:20638232..20638256 (25 bp)
TAGCGTCGGCCATCATCGCGTGAAA
NONE
OsAffx.20167.1.S1_x_at--683--8432Chr10:20638225..20638249 (25 bp)
GGCCATCATCGCGTGAAACGGCGGT
NONE
OsAffx.20167.1.S1_x_at--1123--3552Chr10:20638222..20638246 (25 bp)
CATCATCGCGTGAAACGGCGGTGGC
NONE
OsAffx.20167.1.S1_x_at--1056--9211Chr10:20638145..20638169 (25 bp)
TCCACTGGTTGGGAAGAGGGCCACC
NONE
OsAffx.20167.1.S1_x_at--301--7171Chr10:20637026..20637050 (25 bp)
GTCTCTGATCTTGCCAGGCACAGAT
LOC_Os10g39280
Target Sequence 
TCGTACCCGTCGTCGTTCATTGCTGTCCGCCGGCTCGGTGGCTCCCTGCTCGTCGGCCATCAGCGCAACTCGACAACGAG
GGCGACGGAGCCGTCGTCTAGCGTCGGCCATCATCGCGTGAAACGGCGGTGGCGCCGCCAGCTCCCCATCCACTCGCCCC
CTAGCCTCAAGCCGCCGCCTCCTCATCCACTGGTTGGGAAGAGGGCCACCGGGTGGGTGGGGATGGGGAAGGTGATAGAT
GTGGACTGTGGAGAAAGAGAAGGGAAGAAGAAGGAGAGACATAGCGCTGTCTCTGATCTTGCCAGGCACAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20167.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis