Browse Element(s) Details


Os.8095.1.S1_at

Description gb:AK062464.1
DB_XREF= gi:32972482
TID=Os.8095.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D12, full insert sequence.
FL= gb:AK068987.1 gb:AK066021.1 gb:AK062464.1 gb:AK066541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2205010/11CIPK-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21990Os.46775.1.S1_at11/113+12578330..12584633PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed
LOC_Os03g22010Os.11561.2.S1_a_at11/113+12590649..12595998Peroxidase 2 precursor, putative, expressed
LOC_Os03g22020Os.12843.1.S1_at11/113+12596935..12598451Peroxidase 52 precursor, putative, expressed
LOC_Os03g22030OsAffx.25188.1.S1_at11/113+12602717..12604692hypothetical protein
LOC_Os03g22030OsAffx.20167.1.S1_x_at2/113+12602717..12604692hypothetical protein
LOC_Os03g22040Os.18531.1.S1_at11/113+12606123..12609182expressed protein
LOC_Os03g22050Os.8095.1.S4_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S3_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S2_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S1_at10/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22060Os.10800.1.S1_at1/113+12621916..12625575Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g22070NANA3+12626045..12627413hypothetical protein
LOC_Os03g22080NANA3+12631805..12632284Zinc finger, C3HC4 type family protein
LOC_Os03g22090NANA3+12635464..12638286retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8095.1.S1_at--762--431Chr03:12613903..12613927 (25 bp)
ATCTTCTTTGAGTTGGAGGGCTTGA
LOC_Os03g22050
Os.8095.1.S1_at--248--8271Chr03:12613856..12613880 (25 bp)
GGCAGGGTTAATTCCGATCTCTTTA
LOC_Os03g22050
Os.8095.1.S1_at--853--9511Chr03:12613839..12613863 (25 bp)
TCTCTTTAACCTTCCCGGATCAGAG
LOC_Os03g22050
Os.8095.1.S1_at--713--4251NONE
CCGGGATCAGTATTAGGCTTTTTGC
NONE
Os.8095.1.S1_at--734--231Chr03:12612985..12613009 (25 bp)
ATATTTATGCTTTGTGTGCTCTTGA
LOC_Os03g22050
Os.8095.1.S1_at--669--5331Chr03:12612953..12612977 (25 bp)
GAAGTACGGGTTTATGCACAGCAAG
LOC_Os03g22050
Os.8095.1.S1_at--158--2151Chr03:12612936..12612960 (25 bp)
ACAGCAAGTGCTCCTTGTGCATTTG
LOC_Os03g22050
Os.8095.1.S1_at--483--7531Chr03:12612895..12612919 (25 bp)
GTGGCAGTTCAACCATCATGTTAGA
LOC_Os03g22050
Os.8095.1.S1_at--39--191Chr03:12612834..12612858 (25 bp)
ATTTATTGCCTCTCTCATCTGATAC
LOC_Os03g22050
Os.8095.1.S1_at--728--471Chr03:12612818..12612842 (25 bp)
ATCTGATACTCCCTCATCAATCATC
LOC_Os03g22050
Os.8095.1.S1_at--188--2111Chr03:12612782..12612806 (25 bp)
ACATGATTAGTGCTTTCTGAATACA
LOC_Os03g22050
Target Sequence 
ATCTTCTTTGAGTTGGAGGGCTTGATTTTAGGGGGGACTGCTCGATCGGCAGGGTTAATTCCGATCTCTTTAACCTTCCC
GGATCAGAGCCGGGATCAGTATTAGGCTTTTTGCTAGAAGCACAAAACAAAAGGAATGCTGGAAGATGTGCTTCTATGAT
AGAGAGCTACCTTGTGTGGGAATTGGAAAGGTAGCTCAAAATATTTATGCTTTGTGTGCTCTTGATGATAGTGAAGTACG
GGTTTATGCACAGCAAGTGCTCCTTGTGCATTTGCACGATGGGGCTAGATGTGGCAGTTCAACCATCATGTTAGATTACC
ATCTTGTTGGGGACGGTTGAAATTATTTTTCATTTATTGCCTCTCTCATCTGATACTCCCTCATCAATCATCATCACTAA
GTTACATGATTAGTGCTTTCTGAATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis