Browse Element(s) Details


Os.18531.1.S1_at

Description gb:AK073084.1
DB_XREF= gi:32983107
TID=Os.18531.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033022N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022N12, full insert sequence.
FL= gb:AK073084.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2204011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21990Os.46775.1.S1_at11/113+12578330..12584633PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed
LOC_Os03g22010Os.11561.2.S1_a_at11/113+12590649..12595998Peroxidase 2 precursor, putative, expressed
LOC_Os03g22020Os.12843.1.S1_at11/113+12596935..12598451Peroxidase 52 precursor, putative, expressed
LOC_Os03g22030OsAffx.25188.1.S1_at11/113+12602717..12604692hypothetical protein
LOC_Os03g22030OsAffx.20167.1.S1_x_at2/113+12602717..12604692hypothetical protein
LOC_Os03g22040Os.18531.1.S1_at11/113+12606123..12609182expressed protein
LOC_Os03g22050Os.8095.1.S4_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S3_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S2_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S1_at10/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22060Os.10800.1.S1_at1/113+12621916..12625575Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g22070NANA3+12626045..12627413hypothetical protein
LOC_Os03g22080NANA3+12631805..12632284Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18531.1.S1_at--1086--2571Chr03:12608695..12608719 (25 bp)
AACGTTTCCCTTGGTCAGATTCTGA
LOC_Os03g22040
Os.18531.1.S1_at--498--751Chr03:12608903..12608927 (25 bp)
ATGTAGCTGGCTAGCTGCAGTTCAA
LOC_Os03g22040
Os.18531.1.S1_at--128--4771Chr03:12608916..12608940 (25 bp)
GCTGCAGTTCAATCTGCCGTTCAGA
LOC_Os03g22040
Os.18531.1.S1_at--847--3151Chr03:12608941..12608965 (25 bp)
CAAGTAGCTAATTGTCGGACCCCTT
LOC_Os03g22040
Os.18531.1.S1_at--853--5791Chr03:12608958..12608982 (25 bp)
GACCCCTTTCAATCCTATGTAGTAC
LOC_Os03g22040
Os.18531.1.S1_at--319--751Chr03:12609006..12609030 (25 bp)
ATGTATTATGCTGCAGTTCGCTCTG
LOC_Os03g22040
Os.18531.1.S1_at--319--6711Chr03:12609021..12609045 (25 bp)
GTTCGCTCTGCTGATTAGGGACTAT
LOC_Os03g22040
Os.18531.1.S1_at--317--7511Chr03:12609063..12609087 (25 bp)
GTGGTACTTGTATCATTTCGTAATC
LOC_Os03g22040
Os.18531.1.S1_at--807--3131Chr03:12609103..12609127 (25 bp)
AATTATCCATCATTTCCACTGTGCC
LOC_Os03g22040
Os.18531.1.S1_at--215--9191Chr03:12609124..12609148 (25 bp)
TGCCTCTTAAACCTTTCCATGTTGA
LOC_Os03g22040
Os.18531.1.S1_at--318--5431Chr03:12609149..12609173 (25 bp)
GAACCTTTCTAATGTCTTTCTGTAT
LOC_Os03g22040
Target Sequence 
AACGTTTCCCTTGGTCAGATTCTGAACAGGGNTANANTTTTGTCCAGAGANGNGACGGCTNTTCGCAAGANGNTCTCAGG
GAANAGGNAGAAATTNCNCATTGACTGGGCTCTNCAGTTCTATTGGCGAAGCAAGCCAAGAACAAGAAGAAGNGGGAATN
CCCTCTGATCTNGCTNNCAAGAGATCGATCTTANGTTGTACTTTAGCTGTATTTATGTAGCTGGCTAGCTGCAGTTCAAT
CTGCCGTTCAGACAAGTAGCTAATTGTCGGACCCCTTTCAATCCTATGTAGTACAACGTTCTGTTTAGGTTAGTATGATG
TATTATGCTGCAGTTCGCTCTGCTGATTAGGGACTATAGAGTCAAGTTTTAGTTGTGGTACTTGTATCATTTCGTAATCT
AAATCGATGGATTTAATTATCCATCATTTCCACTGTGCCTCTTAAACCTTTCCATGTTGAGAACCTTTCTAATGTCTTTC
TGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis