Browse Element(s) Details


Os.5988.1.S1_at

Description gb:AK103560.1
DB_XREF= gi:32988769
TID=Os.5988.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5988 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative helicase (OSJNBa0040D23.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132J12, full insert sequence.
FL= gb:AK103560.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3923011/11tRNA-splicing endonuclease positive effector, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39190OsAffx.30718.1.S1_x_at11/1110+20586477..20587415B3 DNA binding domain containing protein
LOC_Os10g39200Os.6652.1.S1_x_at11/1110+20599934..20604898expressed protein
LOC_Os10g39210OsAffx.7941.1.S1_x_at11/1110+20605434..20606105copper chaperone, putative
LOC_Os10g39220Os.10820.1.S1_at10/1110+20606875..20610738tobamovirus multiplication protein 3, putative, expressed
LOC_Os10g39230Os.5988.1.S1_at11/1110+20611078..20618279tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os10g39250OsAffx.30720.1.S1_at6/1110+20625347..20626178hypothetical protein
LOC_Os10g39260Os.6792.1.S1_at7/1110+20627200..20628603Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39270OsAffx.30721.3.S1_at11/1110+20631449..20632642Eukaryotic aspartyl protease family protein
LOC_Os10g39280OsAffx.21973.1.S1_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39280OsAffx.20167.1.S1_x_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39300Os.6792.1.S1_at7/1110+20641556..20642957Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5988.1.S1_at--739--5952Chr07:6364321..6364340 (20 bp)
GAGCAACCTTATTGTCAGGCACAGG
NONE
Os.5988.1.S1_at--685--3471Chr10:20611590..20611614 (25 bp)
CAGGGTGACAGTTCTGGAGCTGCTT
LOC_Os10g39230
Os.5988.1.S1_at--198--8091Chr10:20611575..20611599 (25 bp)
GGAGCTGCTTCCCAGGAACCGGTTA
LOC_Os10g39230
Os.5988.1.S1_at--876--8151Chr10:20611561..20611585 (25 bp)
GGAACCGGTTATCCCTGAGCAGAGA
LOC_Os10g39230
Os.5988.1.S1_at--65--771Chr10:20611533..20611557 (25 bp)
ATGTCAGGTGACTTGTGCGAAGCAG
LOC_Os10g39230
Os.5988.1.S1_at--723--5391Chr10:20611515..20611539 (25 bp)
GAAGCAGTATGCCACCAGAGCAACA
LOC_Os10g39230
Os.5988.1.S1_at--451--1351Chr10:20611499..20611523 (25 bp)
AGAGCAACACGTCAGGTTCACCAAA
LOC_Os10g39230
Os.5988.1.S1_at--979--3371Chr10:20611419..20611443 (25 bp)
CAGCCTGACGGTTCGGGAGTTGCTT
LOC_Os10g39230
Os.5988.1.S1_at--797--3291Chr10:20611394..20611418 (25 bp)
CAAATGAAGCGCCTGTTCCTGAACA
LOC_Os10g39230
Os.5988.1.S1_at--1--9091Chr10:20611229..20611253 (25 bp)
TGCTCTGTATAGGATAGTGTTCCCC
LOC_Os10g39230
Os.5988.1.S1_at--1084--10051Chr10:20611133..20611157 (25 bp)
TAGGGAGAACCTAGGAACCAACCTG
LOC_Os10g39230
Target Sequence 
GAGCAACCTTATTGTCAGGCACAGGGTGACAGTTCTGGAGCTGCTTCCCAGGAACCGGTTATCCCTGAGCAGAGAGGGAT
GTCAGGTGACTTGTGCGAAGCAGTATGCCACCAGAGCAACACGTCAGGTTCACCAAACAGGGGCAGTACTGAAGTAACAC
TCGAAGGTGCAGAACAACCTCATTGCCAGGCGCAGCCTGACGGTTCGGGAGTTGCTTCAAATGAAGCGCCTGTTCCTGAA
CAGCGATGGACGGAAGGGGACTTGGGTGAAGCAGCAGAACCTGGCCAGGGCAATGCAGAAAATAAAGCTGAAAGTGCAGA
GGCAGATAGCTAGACTTTTNAGATCAGATACNGACATATAGATTTCCNGTCCNTTTTTTTTTTGCTCTGTATAGGATAGT
GTTCCCCCNTTTGGTTTATATCCCCNAAATGTGTATAAGCAAGCACGTGGTGTGTNAATNTTTTTGGCTCCTCGNCAGTA
GGGAGAACCTAGGAACCAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis