Browse Element(s) Details


Os.6652.1.S1_x_at

Description gb:AK068850.1
DB_XREF= gi:32978875
TID=Os.6652.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0040D23.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169H09, full insert sequence.
FL= gb:AK068850.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3920011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39190OsAffx.30718.1.S1_x_at11/1110+20586477..20587415B3 DNA binding domain containing protein
LOC_Os10g39200Os.6652.1.S1_x_at11/1110+20599934..20604898expressed protein
LOC_Os10g39210OsAffx.7941.1.S1_x_at11/1110+20605434..20606105copper chaperone, putative
LOC_Os10g39220Os.10820.1.S1_at10/1110+20606875..20610738tobamovirus multiplication protein 3, putative, expressed
LOC_Os10g39230Os.5988.1.S1_at11/1110+20611078..20618279tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os10g39250OsAffx.30720.1.S1_at6/1110+20625347..20626178hypothetical protein
LOC_Os10g39260Os.6792.1.S1_at7/1110+20627200..20628603Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6652.1.S1_x_at--588--8911Chr10:20600496..20600520 (25 bp)
TGAGCACTGCTGACGGGTTCCAAAA
LOC_Os10g39200
Os.6652.1.S1_x_at--659--7811Chr10:20600416..20600440 (25 bp)
GGTCTAGACTCTCCTGGTGATGCAA
LOC_Os10g39200
Os.6652.1.S1_x_at--302--9771Chr10:20600375..20600399 (25 bp)
TAATGGTCGCAAGGCACCTTCTGAT
LOC_Os10g39200
Os.6652.1.S1_x_at--298--4591Chr10:20600322..20600346 (25 bp)
GCGAAGGTAGTTTTCCCATGAACAT
LOC_Os10g39200
Os.6652.1.S1_x_at--614--3511Chr10:20600306..20600330 (25 bp)
CATGAACATTGGTTGGCCGCTAAGT
LOC_Os10g39200
Os.6652.1.S1_x_at--94--8131Chr10:20600276..20600300 (25 bp)
GGACTCTCATATTTGTACAGCAGGG
LOC_Os10g39200
Os.6652.1.S1_x_at--923--9751Chr10:20600235..20600259 (25 bp)
TAATCTCCTCTTCAGTTCACAGGTA
LOC_Os10g39200
Os.6652.1.S1_x_at--327--2131Chr10:20600217..20600241 (25 bp)
ACAGGTATGATATATTTCCGCCGAA
LOC_Os10g39200
Os.6652.1.S1_x_at--827--5971Chr10:20600173..20600197 (25 bp)
GAGAACTTCTTCCATCCAGGCAAAT
LOC_Os10g39200
Os.6652.1.S1_x_at--60--8971Chr10:20600051..20600075 (25 bp)
TGAAAGATCCATCGGTCCTTTTCCT
LOC_Os10g39200
Os.6652.1.S1_x_at--613--3671Chr10:20600034..20600058 (25 bp)
CTTTTCCTCTATCTGTGACCAGTAT
LOC_Os10g39200
Target Sequence 
TGAGCACTGCTGACGGGTTCCAAAATATTCTGCATTCTAATAATTTTGTGAGGCACTCGGAAGGAAAAGATTCTGTCAGT
GGTCTAGACTCTCCTGGTGATGCAACCTGTAGTGATGAAGATAATGGTCGCAAGGCACCTTCTGATGAAGTCAATGACAA
AACTGCAGTCCAAAGCGAAGGTAGTTTTCCCATGAACATTGGTTGGCCGCTAAGTACAATGGACTCTCATATTTGTACAG
CAGGGTCTCAAGAGACGCCCCTAATCTCCTCTTCAGTTCACAGGTATGATATATTTCCGCCGAAGTGGGAGCATATGCTG
AAGGAGAACTTCTTCCATCCAGGCAAATAGGCTACCGAACTGAAAGCTATCAAGGAGATCAAGCAACTATGTTTGCTCAT
GTTCTAACATGCTTATTGTACATATGCTATCGTAATAACGAAACCTGAAAGATCCATCGGTCCTTTTCCTCTATCTGTGA
CCAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6652.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis