Browse Element(s) Details


OsAffx.7941.1.S1_x_at

Description tigr:9638.m03540
TID=OsAffx.7941.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3921011/11copper chaperone, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39190OsAffx.30718.1.S1_x_at11/1110+20586477..20587415B3 DNA binding domain containing protein
LOC_Os10g39200Os.6652.1.S1_x_at11/1110+20599934..20604898expressed protein
LOC_Os10g39210OsAffx.7941.1.S1_x_at11/1110+20605434..20606105copper chaperone, putative
LOC_Os10g39220Os.10820.1.S1_at10/1110+20606875..20610738tobamovirus multiplication protein 3, putative, expressed
LOC_Os10g39230Os.5988.1.S1_at11/1110+20611078..20618279tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os10g39250OsAffx.30720.1.S1_at6/1110+20625347..20626178hypothetical protein
LOC_Os10g39260Os.6792.1.S1_at7/1110+20627200..20628603Eukaryotic aspartyl protease family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0030001biological_processmetal ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7941.1.S1_x_at--350--4151Chr10:20605576..20605600 (25 bp)
CGCCCGTGTCGCTCCAGACGGTGGA
LOC_Os10g39210
OsAffx.7941.1.S1_x_at--952--8711Chr10:20605582..20605606 (25 bp)
TGTCGCTCCAGACGGTGGAGCTCAA
LOC_Os10g39210
OsAffx.7941.1.S1_x_at--1040--2871Chr10:20605605..20605629 (25 bp)
AAGGTGCGGATGTGCTGCGAAGGCT
LOC_Os10g39210
OsAffx.7941.1.S1_x_at--396--9111Chr10:20605617..20605641 (25 bp)
TGCTGCGAAGGCTGCGAGCGCGTCG
LOC_Os10g39210
OsAffx.7941.1.S1_x_at--785--9931Chr10:20605836..20605860 (25 bp)
TACGTGGACCGAGGGAGGGTGCTGC
LOC_Os10g39210
OsAffx.7941.1.S1_x_at--816--5291Chr10:20605883..20605907 (25 bp)
GAAGGCGGAGTTTTGGCCCAGCGGC
LOC_Os10g39210
OsAffx.7941.1.S1_x_at--835--4131Chr10:20605915..20605939 (25 bp)
CGCGGCGGTTCACGTCGGAGAAGGA
LOC_Os10g39210
OsAffx.7941.1.S1_x_at--127--1471Chr10:20605933..20605957 (25 bp)
AGAAGGAGTACTTCCGCGACGGCGA
LOC_Os10g39210
OsAffx.7941.1.S1_x_at--267--7031Chr10:20605961..20605985 (25 bp)
GTACAGGGGCAGCTACAACTACCAC
LOC_Os10g39210
OsAffx.7941.1.S1_x_at--903--4711Chr10:20606017..20606041 (25 bp)
GCTGGATGCGAGAGCCCGCCCGCGG
LOC_Os10g39210
OsAffx.7941.1.S1_x_at--911--4491Chr10:20606049..20606073 (25 bp)
GCCGTCAGCAACATGTTCAACGACG
LOC_Os10g39210
Target Sequence 
CGCCCGTGTCGCTCCAGACGGTGGAGCTCAAGGTGCGGATGTGCTGCGAAGGCTGCGAGCGCGTCGTCCGGAGCGCCCTC
GCCAACCTCCGAGGGGTGGATAGCGTGGAGGTGGACGTGGCGATGGAGAAGGTGAGGGTGACGGGGTACGTGGACCGAGG
GAGGGTGCTGCGCGAGGTGCGGCGGAGCGGGAAGAAGGCGGAGTTTTGGCCCAGCGGCGGCACGCCGCGGCGGTTCACGT
CGGAGAAGGAGTACTTCCGCGACGGCGAGGCGTACAGGGGCAGCTACAACTACCACCGCCGTGGCTACGGCGACGGCGAC
CGCCACGGCTGGATGCGAGAGCCCGCCCGCGGCGCCGACGCCGTCAGCAACATGTTCAACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7941.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis