Browse Element(s) Details


OsAffx.30721.2.S1_x_at

Description tigr:9638.m03551
TID=OsAffx.30721.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative nucleoid DNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3932011/11Eukaryotic aspartyl protease family protein
LOC_Os10g3934010/11Eukaryotic aspartyl protease family protein
LOC_Os10g393302/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39260Os.6792.1.S1_at7/1110+20627200..20628603Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39270OsAffx.30721.3.S1_at11/1110+20631449..20632642Eukaryotic aspartyl protease family protein
LOC_Os10g39280OsAffx.21973.1.S1_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39280OsAffx.20167.1.S1_x_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39300Os.6792.1.S1_at7/1110+20641556..20642957Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39310OsAffx.30721.5.S1_at11/1110+20649378..20650526Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39320OsAffx.30721.2.S1_x_at11/1110+20653362..20654603Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.1.S1_at11/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.2.S1_x_at2/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39340OsAffx.30721.2.S1_x_at10/1110+20664132..20665325Eukaryotic aspartyl protease family protein
LOC_Os10g39350OsAffx.30724.1.S1_at11/1110+20667693..20668883Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39360OsAffx.7936.1.S1_at11/1110+20674266..20675525Eukaryotic aspartyl protease family protein
LOC_Os10g39370OsAffx.18579.1.S1_at11/1110+20676365..20676948hypothetical protein
LOC_Os10g39380OsAffx.18580.1.S1_at11/1110+20679018..20680139Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30721.2.S1_x_at--458--5732Chr10:20664782..20664806 (25 bp)
GACGGCGCCGTTCATCAAGACCTCG
LOC_Os10g39340
OsAffx.30721.2.S1_x_at--797--3832Chr10:20664834..20664858 (25 bp)
CTGCTCAGCCTGGACGCCATTAGAG
LOC_Os10g39340
OsAffx.30721.2.S1_x_at--715--3472Chr10:20664851..20664875 (25 bp)
CATTAGAGCCGGCAACACGACGATC
LOC_Os10g39340
OsAffx.30721.2.S1_x_at--44--1872Chr10:20664867..20664891 (25 bp)
ACGACGATCGCCACGGCTCAGAGCG
LOC_Os10g39340
OsAffx.30721.2.S1_x_at--979--4692Chr10:20664892..20664916 (25 bp)
GCGGCATCCTCGTGATGCACACCGT
LOC_Os10g39340
OsAffx.30721.2.S1_x_at--435--9672Chr10:20664925..20664949 (25 bp)
TCAGCCTCCTGGTCGACAGCGCGTA
LOC_Os10g39340
OsAffx.30721.2.S1_x_at--1091--5592Chr10:20664939..20664963 (25 bp)
GACAGCGCGTACAGGGCCTTCAAGA
LOC_Os10g39340
OsAffx.30721.2.S1_x_at--677--6712Chr10:20665025..20665049 (25 bp)
GTTCGACCTCTGCTTCAAGAAGGCG
LOC_Os10g39340
OsAffx.30721.2.S1_x_at--1048--4473Chr10:20665124..20665148 (25 bp)
GCCGGCGAAGTACCTGATCGACGTC
LOC_Os10g39340
OsAffx.30721.2.S1_x_at--427--9973Chr10:20665134..20665158 (25 bp)
TACCTGATCGACGTCGGCGAGGAGA
LOC_Os10g39340
OsAffx.30721.2.S1_x_at--1047--9231Chr10:20654533..20654557 (25 bp)
TCCATTTCCTCTACGATCTCAAGAA
LOC_Os10g39320
Target Sequence 
GACGGCGCCGTTCATCAAGACCTCGCCCGACGATGACAGCCACCACTACTACCTGCTCAGCCTGGACGCCATTAGAGCCG
GCAACACGACGATCGCCACGGCTCAGAGCGGCGGCATCCTCGTGATGCACACCGTCTCGCCGTTCAGCCTCCTGGTCGAC
AGCGCGTACAGGGCCTTCAAGAAGGCGGTGACGGAGGCCGTCGGCGGCGCGGCCGCGCCGCCGATGGCGACGCCGCCGCA
GCCGTTCGACCTCTGCTTCAAGAAGGCGGCGGGGTTCAGCCGCGCCACCGCCCCGGACCTGGTGTTCACGTTCCAGGGCG
CCGCCGCGTTGACGGTGCCGCCGGCGAAGTACCTGATCGACGTCGGCGAGGAGAAGGACACGGCGTGCGCGGCGATCCTG
AGCATGGCGTGGCTGAACAGGACGGGGTTGGAAGGGGTGAGCGTCCTGGGAAGCTTGCAGCAGGAGGACGTCCATTTCCT
CTACGATCTCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30721.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis