Browse Element(s) Details


OsAffx.7936.1.S1_at

Description gb:NM_197564.1
DB_XREF= gi:37536487
TID=OsAffx.7936.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative nucleoid DNA binding protein (OSJNBa0040D23.23), mRNA.
PROD=putative nucleoid DNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3936011/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39310OsAffx.30721.5.S1_at11/1110+20649378..20650526Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39320OsAffx.30721.2.S1_x_at11/1110+20653362..20654603Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.1.S1_at11/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.2.S1_x_at2/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39340OsAffx.30721.2.S1_x_at10/1110+20664132..20665325Eukaryotic aspartyl protease family protein
LOC_Os10g39350OsAffx.30724.1.S1_at11/1110+20667693..20668883Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39360OsAffx.7936.1.S1_at11/1110+20674266..20675525Eukaryotic aspartyl protease family protein
LOC_Os10g39370OsAffx.18579.1.S1_at11/1110+20676365..20676948hypothetical protein
LOC_Os10g39380OsAffx.18580.1.S1_at11/1110+20679018..20680139Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39390OsAffx.7934.1.S1_at11/1110+20682312..20683529Eukaryotic aspartyl protease family protein
LOC_Os10g39400Os.46491.1.S1_at11/1110+20686895..20688661expressed protein
LOC_Os10g39410Os.12348.1.S1_at11/1110+20689611..20690218Histone H4, putative, expressed
LOC_Os10g39414OsAffx.30725.1.S1_at11/1110+20690696..20692440transposon protein, putative, unclassified
LOC_Os10g39414OsAffx.30725.5.S1_x_at3/1110+20690696..20692440transposon protein, putative, unclassified
LOC_Os10g39420Os.8477.1.S1_a_at11/1110+20697783..20702541Calcium-dependent protein kinase, isoform 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7936.1.S1_at--687--10471Chr10:20674992..20675016 (25 bp)
TTACTCGGCCAGCACGCGTCGAACA
LOC_Os10g39360
OsAffx.7936.1.S1_at--59--8111Chr10:20675033..20675057 (25 bp)
GGACCCCTACTACACGGTGCAGCTG
LOC_Os10g39360
OsAffx.7936.1.S1_at--803--2171Chr10:20675044..20675068 (25 bp)
ACACGGTGCAGCTGGAAGGGATCAA
LOC_Os10g39360
OsAffx.7936.1.S1_at--953--1571Chr10:20675128..20675152 (25 bp)
AGCTCGAGACCTTCAGGCCGTTGAG
LOC_Os10g39360
OsAffx.7936.1.S1_at--617--891Chr10:20675142..20675166 (25 bp)
AGGCCGTTGAGCTACCTGCCCGACG
LOC_Os10g39360
OsAffx.7936.1.S1_at--709--9371Chr10:20675242..20675266 (25 bp)
TCGACCTTTGCTTCCAGAATGCGGC
LOC_Os10g39360
OsAffx.7936.1.S1_at--754--10271Chr10:20675248..20675272 (25 bp)
TTTGCTTCCAGAATGCGGCGGTCAG
LOC_Os10g39360
OsAffx.7936.1.S1_at--843--8391Chr10:20675321..20675345 (25 bp)
GGCGCAGCCGTCGAAGTATCTTCTC
LOC_Os10g39360
OsAffx.7936.1.S1_at--989--5311Chr10:20675333..20675357 (25 bp)
GAAGTATCTTCTCGGCGACGGGAAC
LOC_Os10g39360
OsAffx.7936.1.S1_at--686--2571Chr10:20675361..20675385 (25 bp)
AACGGCACGGTGTGCTTGTCCATCC
LOC_Os10g39360
OsAffx.7936.1.S1_at--1013--9251Chr10:20675383..20675407 (25 bp)
TCCTGAGCTCGACGCGGCTGGACTC
LOC_Os10g39360
Target Sequence 
TTACTCGGCCAGCACGCGTCGAACACCTCCGACGATGGCTCGGACCCCTACTACACGGTGCAGCTGGAAGGGATCAAGGC
CGGTGACGTGGCCGTCGCGGCGGCATCCAGCGGCGGCGGCGCCATCACCGTCCTGCAGCTCGAGACCTTCAGGCCGTTGA
GCTACCTGCCCGACGCCGCGTACCAGGCGCTCGAGAAGGTTGTCACGGCCGCCCTCGGCTCGCCGTCGATGGCGAACCCG
CCGGAACCCTTCGACCTTTGCTTCCAGAATGCGGCGGTCAGCGGCGTGCCGGACCTCGTGTTCACGTTCCAGGGCGGCGC
CACATTGACGGCGCAGCCGTCGAAGTATCTTCTCGGCGACGGGAACGGGAACGGCACGGTGTGCTTGTCCATCCTGAGCT
CGACGCGGCTGGACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis