Browse Element(s) Details


Os.12348.1.S1_at

Description gb:AK119699.1
DB_XREF= gi:37989322
TID=Os.12348.1
CNT=55
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.12348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H4 (P0506B12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-D04, full insert sequence.
FL= gb:AK059098.1 gb:AK119699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3941011/11Histone H4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39340OsAffx.30721.2.S1_x_at10/1110+20664132..20665325Eukaryotic aspartyl protease family protein
LOC_Os10g39350OsAffx.30724.1.S1_at11/1110+20667693..20668883Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39360OsAffx.7936.1.S1_at11/1110+20674266..20675525Eukaryotic aspartyl protease family protein
LOC_Os10g39370OsAffx.18579.1.S1_at11/1110+20676365..20676948hypothetical protein
LOC_Os10g39380OsAffx.18580.1.S1_at11/1110+20679018..20680139Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39390OsAffx.7934.1.S1_at11/1110+20682312..20683529Eukaryotic aspartyl protease family protein
LOC_Os10g39400Os.46491.1.S1_at11/1110+20686895..20688661expressed protein
LOC_Os10g39410Os.12348.1.S1_at11/1110+20689611..20690218Histone H4, putative, expressed
LOC_Os10g39414OsAffx.30725.1.S1_at11/1110+20690696..20692440transposon protein, putative, unclassified
LOC_Os10g39414OsAffx.30725.5.S1_x_at3/1110+20690696..20692440transposon protein, putative, unclassified
LOC_Os10g39420Os.8477.1.S1_a_at11/1110+20697783..20702541Calcium-dependent protein kinase, isoform 1, putative, expressed
LOC_Os10g39430Os.26552.1.S1_at11/1110+20706557..20709446expressed protein
LOC_Os10g39434NANA10+20709917..20711620hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0007001biological_processchromosome organization and biogenesis (sensu Eukaryota)
GO:0009414biological_processresponse to water deprivation
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12348.1.S1_at--19--7211Chr10:20690131..20690155 (25 bp)
GTCGTCAGACATGTCGGGCCGTGGC
LOC_Os10g39410
Os.12348.1.S1_at--453--8291Chr10:20689712..20689736 (25 bp)
GGCTTCTGTGTAGCGACTCTTCTGT
LOC_Os10g39410
Os.12348.1.S1_at--458--10611Chr10:20689709..20689733 (25 bp)
TTCTGTGTAGCGACTCTTCTGTTTA
LOC_Os10g39410
Os.12348.1.S1_at--639--9471Chr10:20689708..20689732 (25 bp)
TCTGTGTAGCGACTCTTCTGTTTAA
LOC_Os10g39410
Os.12348.1.S1_at--132--3891Chr10:20689707..20689731 (25 bp)
CTGTGTAGCGACTCTTCTGTTTAAA
LOC_Os10g39410
Os.12348.1.S1_at--1117--8651Chr10:20689706..20689730 (25 bp)
TGTGTAGCGACTCTTCTGTTTAAAT
LOC_Os10g39410
Os.12348.1.S1_at--1015--7431Chr10:20689705..20689729 (25 bp)
GTGTAGCGACTCTTCTGTTTAAATG
LOC_Os10g39410
Os.12348.1.S1_at--1131--8751Chr10:20689704..20689728 (25 bp)
TGTAGCGACTCTTCTGTTTAAATGA
LOC_Os10g39410
Os.12348.1.S1_at--328--6971Chr10:20689703..20689727 (25 bp)
GTAGCGACTCTTCTGTTTAAATGAA
LOC_Os10g39410
Os.12348.1.S1_at--25--9951Chr10:20689702..20689726 (25 bp)
TAGCGACTCTTCTGTTTAAATGAAT
LOC_Os10g39410
Os.12348.1.S1_at--773--4591Chr10:20689700..20689724 (25 bp)
GCGACTCTTCTGTTTAAATGAATTC
LOC_Os10g39410
Target Sequence 
GTCGTCAGACATGTCGGGCCGTGGCAAGGGAGGCAAGGGGCTGGGCAAGGGAGGCGCGAAGAGGCACAGGAAGGTGCTGC
GCGACAACATCCAGGGGATCACGAAGCCCGCGATCCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTG
ATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGC
CCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCT
GATTCCTTCCTTCCTTCCTTCCTGGTGGCGTGCGGGTGGTGGTGGTGGTGTAGGAGCTAGGGTTTCGATGGGATTCGGGG
GGAATTTCTGCTTTGTGTTGGCTTCTGTGTAGCGACTCTTCTGTTTAAATGAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis