Browse Element(s) Details


Os.46491.1.S1_at

Description gb:AK071222.1
DB_XREF= gi:32981245
TID=Os.46491.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0025B05.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085I16, full insert sequence.
FL= gb:AK071222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3940011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39330OsAffx.30721.1.S1_at11/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39330OsAffx.30721.2.S1_x_at2/1110+20661238..20662494Eukaryotic aspartyl protease family protein
LOC_Os10g39340OsAffx.30721.2.S1_x_at10/1110+20664132..20665325Eukaryotic aspartyl protease family protein
LOC_Os10g39350OsAffx.30724.1.S1_at11/1110+20667693..20668883Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39360OsAffx.7936.1.S1_at11/1110+20674266..20675525Eukaryotic aspartyl protease family protein
LOC_Os10g39370OsAffx.18579.1.S1_at11/1110+20676365..20676948hypothetical protein
LOC_Os10g39380OsAffx.18580.1.S1_at11/1110+20679018..20680139Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39390OsAffx.7934.1.S1_at11/1110+20682312..20683529Eukaryotic aspartyl protease family protein
LOC_Os10g39400Os.46491.1.S1_at11/1110+20686895..20688661expressed protein
LOC_Os10g39410Os.12348.1.S1_at11/1110+20689611..20690218Histone H4, putative, expressed
LOC_Os10g39414OsAffx.30725.1.S1_at11/1110+20690696..20692440transposon protein, putative, unclassified
LOC_Os10g39414OsAffx.30725.5.S1_x_at3/1110+20690696..20692440transposon protein, putative, unclassified
LOC_Os10g39420Os.8477.1.S1_a_at11/1110+20697783..20702541Calcium-dependent protein kinase, isoform 1, putative, expressed
LOC_Os10g39430Os.26552.1.S1_at11/1110+20706557..20709446expressed protein
LOC_Os10g39434NANA10+20709917..20711620hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46491.1.S1_at--954--7351Chr10:20687444..20687468 (25 bp)
GTGAACCACATGCTCAACACTGATG
LOC_Os10g39400
Os.46491.1.S1_at--394--671Chr10:20687405..20687429 (25 bp)
ATGAACGACACCATTCTGCAAGCCT
LOC_Os10g39400
Os.46491.1.S1_at--546--111Chr10:20687393..20687417 (25 bp)
ATTCTGCAAGCCTACGACCTTGAGG
LOC_Os10g39400
Os.46491.1.S1_at--554--7551Chr10:20687338..20687362 (25 bp)
GTGGCCCGTTCCTACTGCTTGATGT
LOC_Os10g39400
Os.46491.1.S1_at--297--3611Chr10:20687321..20687345 (25 bp)
CTTGATGTAGGAAAGCTCTCCCGGG
LOC_Os10g39400
Os.46491.1.S1_at--650--5271Chr10:20687269..20687293 (25 bp)
GAATGCATTATGACGGCGATGTGTA
LOC_Os10g39400
Os.46491.1.S1_at--992--10731Chr10:20687234..20687258 (25 bp)
TTGCACATCATGCTCAATGCATTGG
LOC_Os10g39400
Os.46491.1.S1_at--104--3011Chr10:20687219..20687243 (25 bp)
AATGCATTGGTGATCGAGTCACAAC
LOC_Os10g39400
Os.46491.1.S1_at--833--5391Chr10:20687169..20687193 (25 bp)
GAAGCAGGTGTGTTCTCACACCCTG
LOC_Os10g39400
Os.46491.1.S1_at--793--8791Chr10:20687159..20687183 (25 bp)
TGTTCTCACACCCTGTTCTTTTGGT
LOC_Os10g39400
Os.46491.1.S1_at--70--2671Chr10:20686959..20686983 (25 bp)
AAGCCGAGCTGTTGTGTTGTATACT
LOC_Os10g39400
Target Sequence 
GTGAACCACATGCTCAACACTGATGCCAAGAAAGTACACATGAACGACACCATTCTGCAAGCCTACGACCTTGAGGTCGA
GCAGAGGGGGCTCTTGCAGCGCGACGGTGGCCCGTTCCTACTGCTTGATGTAGGAAAGCTCTCCCGGGGGTGTGGGCAGC
NATGCACGGCTGATGGAATGCATTATGACGGCGATGTGTATGATGCGNNCTTGCACATCATGCTCAATGCATTGGTGATC
GAGTCACAACAGAGGATTTGATTGATTGGGTTCTTGAAGCAGGTGTGTTCTCACACCCTGTTCTTTTGGTCCAGTATAAT
ACAGGGGTAAGTAGGAATTGTTGTGAATTANGGGGTGTTCTTTTGATCGCTTCAACATTTTGNNCGCTTGCCAGAATCCA
TAGTTGGATTCCTCAACCTTAGAATGTAATTTAAGGGAATCTTAGAACAACACTCTTTTTCTCCTTTTCTTTTTGGGCTA
AATGGCAAGCCGAGCTGTTGTGTTGTATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis