Browse Element(s) Details


Os.28087.1.S1_s_at

Description gb:AK102640.1
DB_XREF= gi:32987849
TID=Os.28087.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative sugar transporter (OSJNBb0064P21.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033100A10, full insert sequence.
FL= gb:AK067391.1 gb:AK102640.1 gb:AK065191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3944011/11hexose transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39420Os.8477.1.S1_a_at11/1110+20697783..20702541Calcium-dependent protein kinase, isoform 1, putative, expressed
LOC_Os10g39430Os.26552.1.S1_at11/1110+20706557..20709446expressed protein
LOC_Os10g39434NANA10+20709917..20711620hypothetical protein
LOC_Os10g39440Os.28087.1.S1_s_at11/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39440Os.49153.1.A1_x_at11/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39440Os.28087.1.S1_at9/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39450Os.51573.1.S1_x_at2/1110+20725755..20726522Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39460Os.46866.1.S1_at11/1110+20728433..20731616PPR986-12, putative, expressed
LOC_Os10g39470OsAffx.1887.1.S1_x_at11/1110+20736620..20745261expressed protein
LOC_Os10g39470Os.7121.1.S1_at11/1110+20736620..20745261expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005337molecular_functionnucleoside transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28087.1.S1_s_at--1106--7811Chr10:20722727..20722751 (25 bp)
GGTCATTTTCCATTTGTGTTTCTTT
LOC_Os10g39440
Os.28087.1.S1_s_at--845--7131Chr10:20722728..20722752 (25 bp)
GTCATTTTCCATTTGTGTTTCTTTG
LOC_Os10g39440
Os.28087.1.S1_s_at--231--3591Chr10:20722730..20722754 (25 bp)
CATTTTCCATTTGTGTTTCTTTGGA
LOC_Os10g39440
Os.28087.1.S1_s_at--177--4291Chr10:20722736..20722760 (25 bp)
CCATTTGTGTTTCTTTGGAATTCTT
LOC_Os10g39440
Os.28087.1.S1_s_at--607--8671Chr10:20722741..20722765 (25 bp)
TGTGTTTCTTTGGAATTCTTCTCCC
LOC_Os10g39440
Os.28087.1.S1_s_at--227--8751Chr10:20722766..20722790 (25 bp)
TGTAACTAGTGGTCTATCACAGTTG
LOC_Os10g39440
Os.28087.1.S1_s_at--284--9811Chr10:20722768..20722792 (25 bp)
TAACTAGTGGTCTATCACAGTTGTG
LOC_Os10g39440
Os.28087.1.S1_s_at--702--2031Chr10:20722770..20722794 (25 bp)
ACTAGTGGTCTATCACAGTTGTGTT
LOC_Os10g39440
Os.28087.1.S1_s_at--69--1111Chr10:20722773..20722797 (25 bp)
AGTGGTCTATCACAGTTGTGTTACT
LOC_Os10g39440
Os.28087.1.S1_s_at--580--7811Chr10:20722776..20722800 (25 bp)
GGTCTATCACAGTTGTGTTACTGGT
LOC_Os10g39440
Os.28087.1.S1_s_at--844--3651Chr10:20722779..20722803 (25 bp)
CTATCACAGTTGTGTTACTGGTTTT
LOC_Os10g39440
Target Sequence 
GGTCATTTTCCATTTGTGTTTCTTTGGAATTCTTCTCCCTGTAACTAGTGGTCTATCACAGTTGTGTTACTGGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28087.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis