Browse Element(s) Details


Os.28578.1.S1_at

Description gb:AK111346.1
DB_XREF= gi:32996555
TID=Os.28578.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28578 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0480C01.14 (P0480C01.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G02, full insert sequence.
FL= gb:AK111346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g520602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52050Os.15135.1.S1_at11/111+30254432..30258299Brassinosteroid LRR receptor kinase precursor, putative, expressed
LOC_Os01g52050OsAffx.6027.1.S1_at1/111+30254432..30258299Brassinosteroid LRR receptor kinase precursor, putative, expressed
LOC_Os01g52060Os.28578.1.S1_at2/111+30264395..30264722expressed protein
LOC_Os01g52070OsAffx.21536.1.S1_at11/111+30270757..30275501cation channel family protein
LOC_Os01g52080OsAffx.2309.1.S1_at11/111+30276019..30276519hypothetical protein
LOC_Os01g52090OsAffx.23759.1.S1_at11/111+30276890..30279533expressed protein
LOC_Os01g52100Os.33038.1.S1_a_at11/111+30287541..30289912expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28578.1.S1_at--1141--5931Chr01:30263526..30263550 (25 bp)
GAGCACTACTGGTCTATGGGTTCTG
NONE
Os.28578.1.S1_at--455--6391Chr01:30264352..30264376 (25 bp)
GATCGACCACAGGACAACACAGGAG
NONE
Os.28578.1.S1_at--627--2471Chr01:30264367..30264391 (25 bp)
AACACAGGAGCCAACGGAGCGGGAC
NONE
Os.28578.1.S1_at--1124--1591Chr01:30264384..30264408 (25 bp)
AGCGGGACGCCATGAGGCCTCAAGC
NONE
Os.28578.1.S1_at--1014--5731Chr01:30264648..30264669 (22 bp)
GACGGAATGGCCATCGACCAAGGGA
LOC_Os01g52060
Os.28578.1.S1_at--416--2891Chr01:30264664..30264688 (25 bp)
AAGGGATCGATCACTTGCTCGTACT
LOC_Os01g52060
Os.28578.1.S1_at--284--9631Chr01:30264703..30264727 (25 bp)
TCATGTGCCTGTTCCGCTGAGTGGA
NONE
Os.28578.1.S1_at--805--8551Chr01:30264732..30264756 (25 bp)
TGGAGGCAACTGAACAGCTCTTCCC
NONE
Os.28578.1.S1_at--909--4811Chr01:30264748..30264772 (25 bp)
GCTCTTCCCTGAATATTAGCTTCTT
NONE
Os.28578.1.S1_at--917--751Chr01:30264802..30264826 (25 bp)
ATGTGTTCTTTAAAATCTTGCCCAA
NONE
Os.28578.1.S1_at--38--732Chr12:23135638..23135727 (24 bp)
ATGATACGTGTTGTGCTCCATATAA
NONE
Target Sequence 
GAGCACTACTGGTCTATGGGTTCTGTTCCGTTCTGTTCTGGCGCTCCTCTCTACGGGTGATCGCTAACNNNNNNTCTNNN
NNNANNNNNNNCTNNNNNCANNNNNNGCCTGACGAGATCGACCACAGGACAACACAGGAGCCAACGGAGCGGGACGCCAT
GAGGCCTCAAGCTCTCGTGCTCGCCAACTTCCTGGCCGCCGCGCTGCTGCACCCGTTGCTGTGCCAAGGCGCCGCCGCCG
CCTCGCCTGCCTCCATCGCCGGGAAGCTCGCCATGGACGGAATGGCCATCGACCAAGGGATCGATCACTTGCTCGTACTC
GCGGCGATCTTCGTCATGTGCCTGTTCCGCTGAGTGGAGGGCTGGAGGCAACTGAACAGCTCTTCCCTGAATATTAGCTT
CTTTATTTTTCTTAATTTGTACATGTACATGCATGTGTTCTTTAAAATCTTGCCCAAAGGTTGTAGAATTTTATCATGCC
GAAGTTCAACGAAGACGTTGAAATAAGAGCGAATTATGATACGTGTTGTGCTCCATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis