Browse Element(s) Details


OsAffx.6027.1.S1_at

Description tigr:9636.m03512
TID=OsAffx.6027.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3499011/11Late embryogenesis abundant protein
LOC_Os01g520501/11Brassinosteroid LRR receptor kinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34960OsAffx.17339.1.S1_at11/118+21879775..21880377Myb-like DNA-binding domain containing protein
LOC_Os08g34970Os.24582.1.S1_at11/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34970Os.55324.1.S1_at3/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34980OsAffx.17340.1.S1_at11/118+21896788..21897217hypothetical protein
LOC_Os08g34990OsAffx.6027.1.S1_at11/118+21904523..21904840Late embryogenesis abundant protein
LOC_Os08g35000Os.27481.1.S2_at11/118+21906077..21915834expressed protein
LOC_Os08g35000Os.27481.1.S1_at11/118+21906077..21915834expressed protein
LOC_Os08g35000OsAffx.23485.1.S1_at1/118+21906077..21915834expressed protein
LOC_Os08g35000Os.22539.2.A1_a_at1/118+21906077..21915834expressed protein
LOC_Os08g35010NANA8+21921240..21925855hypothetical protein
LOC_Os08g35020Os.50495.1.S1_at11/118+21927204..21932299retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0010234biological_processtapetal cell fate specification
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6027.1.S1_at--79--8891Chr08:21904638..21904662 (25 bp)
TGAGGCAGCAAGAGCCTGCGACGGC
LOC_Os08g34990
OsAffx.6027.1.S1_at--40--10611Chr08:21904733..21904757 (25 bp)
TTCTGGATGAGGGAGCCCAGGACGG
LOC_Os08g34990
OsAffx.6027.1.S1_at--458--2571Chr08:21904760..21904784 (25 bp)
AACTGGATGCCGGAGAACCACTTCA
LOC_Os08g34990
OsAffx.6027.1.S1_at--853--1931Chr08:21904761..21904785 (25 bp)
ACTGGATGCCGGAGAACCACTTCAA
LOC_Os08g34990
OsAffx.6027.1.S1_at--1154--8552Chr08:21904763..21904787 (25 bp)
TGGATGCCGGAGAACCACTTCAACG
LOC_Os08g34990
OsAffx.6027.1.S1_at--805--7971Chr08:21904764..21904788 (25 bp)
GGATGCCGGAGAACCACTTCAACGA
LOC_Os08g34990
OsAffx.6027.1.S1_at--380--6351Chr08:21904765..21904789 (25 bp)
GATGCCGGAGAACCACTTCAACGAC
LOC_Os08g34990
OsAffx.6027.1.S1_at--983--591Chr08:21904766..21904790 (25 bp)
ATGCCGGAGAACCACTTCAACGACG
LOC_Os08g34990
OsAffx.6027.1.S1_at--290--9171Chr08:21904767..21904791 (25 bp)
TGCCGGAGAACCACTTCAACGACGT
LOC_Os08g34990
OsAffx.6027.1.S1_at--372--4491Chr08:21904768..21904792 (25 bp)
GCCGGAGAACCACTTCAACGACGTC
LOC_Os08g34990
OsAffx.6027.1.S1_at--975--3951Chr08:21904770..21904794 (25 bp)
CGGAGAACCACTTCAACGACGTCGA
LOC_Os08g34990
Target Sequence 
TGAGGCAGCAAGAGCCTGCGACGGCGGCGGCGGCCGGCACGACGGCGAAGCTGCAGGCGGCGGAGGGAGCCGCCGCCGGG
AGTAAGGAGGGGTTCTTCTGGATGAGGGAGCCCAGGACGGGGAACTGGATGCCGGAGAACCACTTCAACGACGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis