Browse Element(s) Details


Os.27481.1.S1_at

Description gb:AK070728.1
DB_XREF= gi:32980751
TID=Os.27481.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058P14, full insert sequence.
FL= gb:AK070728.1 gb:AK060745.1 gb:AK066110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3500011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34970Os.24582.1.S1_at11/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34970Os.55324.1.S1_at3/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34980OsAffx.17340.1.S1_at11/118+21896788..21897217hypothetical protein
LOC_Os08g34990OsAffx.6027.1.S1_at11/118+21904523..21904840Late embryogenesis abundant protein
LOC_Os08g35000Os.27481.1.S2_at11/118+21906077..21915834expressed protein
LOC_Os08g35000Os.27481.1.S1_at11/118+21906077..21915834expressed protein
LOC_Os08g35000OsAffx.23485.1.S1_at1/118+21906077..21915834expressed protein
LOC_Os08g35000Os.22539.2.A1_a_at1/118+21906077..21915834expressed protein
LOC_Os08g35010NANA8+21921240..21925855hypothetical protein
LOC_Os08g35020Os.50495.1.S1_at11/118+21927204..21932299retrotransposon protein, putative, unclassified, expressed
LOC_Os08g35030OsAffx.17341.1.S1_at11/118+21933338..21934835hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27481.1.S1_at--1044--7951Chr08:21911155..21911179 (25 bp)
GGATGCTAGTTTGTTGGGCTCACTG
LOC_Os08g35000
Os.27481.1.S1_at--156--3151Chr08:21910101..21910124 (24 bp)
AATTCGAGGGTGTAGACTCCAGAAC
LOC_Os08g35000
Os.27481.1.S1_at--713--1431Chr08:21909678..21910105 (25 bp)
AGAACAGAGTCAGTGCTGCTCCTCC
LOC_Os08g35000
Os.27481.1.S1_at--1044--6831Chr08:21909565..21909589 (25 bp)
GTTTCTGGCAGTCCGCAAACATGTT
LOC_Os08g35000
Os.27481.1.S1_at--156--2871Chr08:21909409..21909433 (25 bp)
AAGGGCCAGTTAGTTCGTGCTGTCT
LOC_Os08g35000
Os.27481.1.S1_at--117--7651Chr08:21909378..21909402 (25 bp)
GGGAGGACGACAAACCATCTTCAGT
LOC_Os08g35000
Os.27481.1.S1_at--325--3651Chr08:21909360..21909384 (25 bp)
CTTCAGTTGAGCCTTTGACTTCGAT
LOC_Os08g35000
Os.27481.1.S1_at--646--5691Chr08:21909344..21909368 (25 bp)
GACTTCGATATCTGTGGCTTCTGGA
LOC_Os08g35000
Os.27481.1.S1_at--1043--10151Chr08:21908794..21908818 (25 bp)
TATCTTGCTCCGGAAATCTCTTACA
LOC_Os08g35000
Os.27481.1.S1_at--59--831Chr08:21908658..21908682 (25 bp)
ATGGTCTATATTCTCATCTGCCAAG
LOC_Os08g35000
Os.27481.1.S1_at--628--1311Chr08:21908635..21908659 (25 bp)
AGATGGTCAGCATCCCTTGTTAAGG
LOC_Os08g35000
Target Sequence 
GGATGCTAGTTTGTTGGGCTCACTGGAGGATGGTTTGAATGCTCTGCTCAATATTGAAATTCGAGGGTGTAGACTCCAGA
ACAGAGTCAGTGCTGCTCCTCCACCTCTTCATGCTGAAACTCTTCCACATGGGGTGGTTACAATGCGTTGTGATATCACA
ACATGCAGTTCTTCACACGTGTCATTGCTTGTTTCTGGCAGTCCGCAAACATGTTTTGATGACAAGCTTTTGGAGAACCA
TATTAAAAAGGAAATTGTTGAGAAGGGCCAGTTAGTTCGTGCTGTCTTAGTTAGGGAGGACGACAAACCATCTTCAGTTG
AGCCTTTGACTTCGATATCTGTGGCTTCTGGAGCTTCTACTTTTGAAGTCTGGATGACCCTACCTAAGTGGGCAGGACAG
GTTTTGAAATATCTTGCTCCGGAAATCTCTTACAAAAGCCTGGTTCCACTTGGAATTGCTTGNGTAAATGGAACTCCAGT
TTCTTCGTTTGATAGACAAGATGTGGATCGGCTTCTTTTCTTTTGCAAAAATGAAGCTATTGTAAATGGTCTATATTCTC
ATCTGCCAAGATGGTCAGCATCCCTTGTTAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis