Browse Element(s) Details


Os.27481.1.S2_at

Description gb:AK066110.1
DB_XREF= gi:32976128
TID=Os.27481.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050J22, full insert sequence.
FL= gb:AK070728.1 gb:AK060745.1 gb:AK066110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3500011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34970Os.24582.1.S1_at11/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34970Os.55324.1.S1_at3/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34980OsAffx.17340.1.S1_at11/118+21896788..21897217hypothetical protein
LOC_Os08g34990OsAffx.6027.1.S1_at11/118+21904523..21904840Late embryogenesis abundant protein
LOC_Os08g35000Os.27481.1.S2_at11/118+21906077..21915834expressed protein
LOC_Os08g35000Os.27481.1.S1_at11/118+21906077..21915834expressed protein
LOC_Os08g35000OsAffx.23485.1.S1_at1/118+21906077..21915834expressed protein
LOC_Os08g35000Os.22539.2.A1_a_at1/118+21906077..21915834expressed protein
LOC_Os08g35010NANA8+21921240..21925855hypothetical protein
LOC_Os08g35020Os.50495.1.S1_at11/118+21927204..21932299retrotransposon protein, putative, unclassified, expressed
LOC_Os08g35030OsAffx.17341.1.S1_at11/118+21933338..21934835hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27481.1.S2_at--237--5271Chr08:21906688..21906710 (23 bp)
GAATGCTGCTTACTCTGCCACAGTA
LOC_Os08g35000
Os.27481.1.S2_at--271--9211Chr08:21906587..21906695 (25 bp)
TGCCACAGTAGTGCTCCAGGTGATT
LOC_Os08g35000
Os.27481.1.S2_at--258--5111Chr08:21906531..21906555 (25 bp)
GCACTTTGGGTGTGATAGACGGCAA
LOC_Os08g35000
Os.27481.1.S2_at--717--3191Chr08:21906512..21906533 (22 bp)
CAAGGGCTAGGCACATTCAAGGACT
LOC_Os08g35000
Os.27481.1.S2_at--780--1311Chr08:21906378..21906402 (25 bp)
AGATGGGTTGGAATATATCTGCCCC
LOC_Os08g35000
Os.27481.1.S2_at--324--3851Chr08:21906351..21906375 (25 bp)
CTGCAGCCTCGCGAACTATAAGAAG
LOC_Os08g35000
Os.27481.1.S2_at--224--3811Chr08:21906316..21906340 (25 bp)
CTCCCGAGAGTGCTAATGGCTTCAG
LOC_Os08g35000
Os.27481.1.S2_at--1024--271Chr08:21906290..21906314 (25 bp)
ATAGCATCTGCACAACGGAATATTT
LOC_Os08g35000
Os.27481.1.S2_at--1122--8751Chr08:21906259..21906283 (25 bp)
TGTTACTCTTTTTTAGCCTACTGTC
LOC_Os08g35000
Os.27481.1.S2_at--84--4451Chr08:21906244..21906268 (25 bp)
GCCTACTGTCCCACTTTTGGGTAAG
LOC_Os08g35000
Os.27481.1.S2_at--93--8331Chr08:21906101..21906122 (22 bp)
GGCTCTAATTAATTGCTGGGTTGCA
LOC_Os08g35000
Target Sequence 
GAATGCTGCTTACTCTGCCACAGTAGTGCTCCAGGTGATTGGGTTAACTGTGGGTTGTGCGGTGAATGGGCGCACTTTGG
GTGTGATAGACGGCAAGGGCTAGGCACATTCAAGGACTATGCGAAGACAGATGGGTTGGAATATATCTGCCCCCACTGCA
GCCTCGCGAACTATAAGAAGAAGCCACCGCCTCCCGAGAGTGCTAATGGCTTCAGAATAGCATCTGCACAACGGAATATT
TAATTTTTGTTACTCTTTTTTAGCCTACTGTCCCACTTTTGGGTAAGACAGGGCTGGTAGATAGCATGTTTTAAACAATG
TAGTGTTTAGCTGTATTATGTCATTAACATCATTTATTTAGTGAAAGGTTTTATATTGATTGTAATCAGTGAAGTGACAA
CTCAGAAAGGCTCTAATTAATTGCTGGGTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27481.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis