Browse Element(s) Details


OsAffx.23485.1.S1_at

Description tigr:9629.m03124
TID=OsAffx.23485.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3335011/11zinc-binding family protein, putative
LOC_Os08g350001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33290OsAffx.2138.1.S1_at11/111+18676688..18678717hypothetical protein
LOC_Os01g33300Os.8128.1.S1_at11/111+18679680..18681352Exopolygalacturonase precursor, putative, expressed
LOC_Os01g33324OsAffx.8880.1.S1_at1/111+18685874..18690126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33350OsAffx.23485.1.S1_at11/111+18692022..18693256zinc-binding family protein, putative
LOC_Os01g33360OsAffx.23486.1.S1_at11/111+18696856..18698902dnaK protein, expressed
LOC_Os01g33370OsAffx.11299.1.S1_s_at11/111+18701672..18703510expressed protein
LOC_Os01g33370OsAffx.11299.1.S1_at11/111+18701672..18703510expressed protein
LOC_Os01g33380NANA1+18705398..18706363hypothetical protein
LOC_Os01g33390OsAffx.23487.1.S1_at11/111+18711004..18711632hypothetical protein
LOC_Os01g33400NANA1+18713139..18713773Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g33410Os.52853.1.S1_at11/111+18717069..18720977hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003677molecular_functionDNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23485.1.S1_at--783--511Chr01:18693121..18693145 (25 bp)
ATCGATTGCCAAGCACCAGAAGCTG
LOC_Os01g33350
OsAffx.23485.1.S1_at--626--4351Chr01:18693106..18693130 (25 bp)
CCAGAAGCTGCCTTTTGCTATTACT
LOC_Os01g33350
OsAffx.23485.1.S1_at--594--8731Chr01:18693073..18693097 (25 bp)
TGTCATCATTCTTCTCATCGTGTAA
LOC_Os01g33350
OsAffx.23485.1.S1_at--1089--10091Chr01:18692784..18692808 (25 bp)
TAGGCGATCATCATACCACGACGTG
LOC_Os01g33350
OsAffx.23485.1.S1_at--773--5271Chr01:18692676..18692700 (25 bp)
GAATGAGCGACCTCAGCTACGTGGT
LOC_Os01g33350
OsAffx.23485.1.S1_at--589--4331Chr01:18692624..18692648 (25 bp)
CCATCCTCATTGTCCTCTTATAATT
LOC_Os01g33350
OsAffx.23485.1.S1_at--1098--9731Chr01:18692604..18692628 (25 bp)
TAATTGTGAGACTTGTAGCCGTGTT
LOC_Os01g33350
OsAffx.23485.1.S1_at--650--1671Chr01:18692588..18692612 (25 bp)
AGCCGTGTTCTTCTTGATGCATTCC
LOC_Os01g33350
OsAffx.23485.1.S1_at--228--9492Chr08:21910835..21911137 (25 bp)
TCTGCTCACTTGGTTGCAATCTCAT
LOC_Os08g35000
OsAffx.23485.1.S1_at--285--6971Chr01:18692240..18692264 (25 bp)
GTAGCTAACGATGGTATTGCCCACA
LOC_Os01g33350
OsAffx.23485.1.S1_at--883--3231Chr01:18692056..18692080 (25 bp)
CAACAAGGGTTGTTCGTCACCGACG
LOC_Os01g33350
Target Sequence 
ATCGATTGCCAAGCACCAGAAGCTGCCTTTTGCTATTACTGTCGTTCATGTCATCATTCTTCTCATCGTGTAATCCAGAT
TAGGCGATCATCATACCACGACGTGGTAAAAGTATCTGAGTTAGAGGATATCCTTGATATCAGCGATGTACAAACCTATG
TAATCAACAGTGCAAGGGTTGTGTTTTTGAATGAGCGACCTCAGCTACGTGGTTGTGGTGTTTTGGCAATAAAATCATCG
CCATCCTCATTGTCCTCTTATAATTGTGAGACTTGTAGCCGTGTTCTTCTTGATGCATTCCGCTTCTGCTCACTTGGTTG
CAATCTCATAGGCATAAAAAATGATGTGGAGACAGTTGTAGCTAACGATGGTATTGCCCACAATGATAAAGACATAGAGA
TTGATGGCAGCAATGGTACTGCAAACACCAATGGTACTGGAAAGGGCATAGAGATTTGTGGCAACAACGGTACTATTGCA
AATACTGGAAATGAGGATGAAATATGTAGTGATGCTAGCAAGAATAAGGAAATACTATCATCAACAAGGGTTGTTCGTCA
CCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis