Browse Element(s) Details


OsAffx.23487.1.S1_at

Description tigr:9629.m03128
TID=OsAffx.23487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3339011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33324OsAffx.8880.1.S1_at1/111+18685874..18690126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33350OsAffx.23485.1.S1_at11/111+18692022..18693256zinc-binding family protein, putative
LOC_Os01g33360OsAffx.23486.1.S1_at11/111+18696856..18698902dnaK protein, expressed
LOC_Os01g33370OsAffx.11299.1.S1_s_at11/111+18701672..18703510expressed protein
LOC_Os01g33370OsAffx.11299.1.S1_at11/111+18701672..18703510expressed protein
LOC_Os01g33380NANA1+18705398..18706363hypothetical protein
LOC_Os01g33390OsAffx.23487.1.S1_at11/111+18711004..18711632hypothetical protein
LOC_Os01g33400NANA1+18713139..18713773Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g33410Os.52853.1.S1_at11/111+18717069..18720977hAT family dimerisation domain containing protein, expressed
LOC_Os01g33420Os.27578.1.S1_at11/111+18721100..18728532glycosyl hydrolase family protein 27, putative, expressed
LOC_Os01g33430OsAffx.11301.1.S1_at11/111+18732198..18737254Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23487.1.S1_at--228--8231Chr01:18711493..18711514 (22 bp)
GGCAATCTATGCACATCAGGGTCAT
LOC_Os01g33390
OsAffx.23487.1.S1_at--747--9591Chr01:18711411..18711435 (25 bp)
TCATTCCCAGGAAGCCGGTTCAAGG
LOC_Os01g33390
OsAffx.23487.1.S1_at--378--991Chr01:18711389..18711413 (25 bp)
AGGAGTGCTGCTTCTTTGTCTTGGA
LOC_Os01g33390
OsAffx.23487.1.S1_at--258--3011Chr01:18711341..18711365 (25 bp)
AATGCAGGGTACTCACCTGCTTCAA
LOC_Os01g33390
OsAffx.23487.1.S1_at--822--3831Chr01:18711325..18711349 (25 bp)
CTGCTTCAAGGATGGCTAGATCGCC
LOC_Os01g33390
OsAffx.23487.1.S1_at--663--8491Chr01:18711280..18711304 (25 bp)
TGGCTAGGTGGCGTCCAGCAAGAAA
LOC_Os01g33390
OsAffx.23487.1.S1_at--418--5551Chr01:18711259..18711283 (25 bp)
GAAACCAGGCTGCAGGTATCTCATT
LOC_Os01g33390
OsAffx.23487.1.S1_at--579--1011Chr01:18711246..18711270 (25 bp)
AGGTATCTCATTCAGGCTCTGTTGG
LOC_Os01g33390
OsAffx.23487.1.S1_at--10--7271Chr01:18711174..18711198 (25 bp)
GTCCTACTGCTTTGGGTTCTGTGTC
LOC_Os01g33390
OsAffx.23487.1.S1_at--778--3891Chr01:18711156..18711180 (25 bp)
CTGTGTCTGGCGGAAGAAACTCTTC
LOC_Os01g33390
OsAffx.23487.1.S1_at--598--2531Chr01:18711139..18711163 (25 bp)
AACTCTTCCCAAATGGTTGCTGGCA
LOC_Os01g33390
Target Sequence 
GGCAATCTATGCACATCAGGGTCATCATTCCCAGGAAGCCGGTTCAAGGAGTGCTGCTTCTTTGTCTTGGAGGCGCTCTG
GGAGTAATATGGAGAATGCAGGGTACTCACCTGCTTCAAGGATGGCTAGATCGCCTGGCCATCGTGGGCGAGCAGTGGCT
AGGTGGCGTCCAGCAAGAAACCAGGCTGCAGGTATCTCATTCAGGCTCTGTTGGTGCTCCTCTCCAATGTCTGCTGTGGG
GGGAAATGTTCATGGGGCTGGGTCCTACTGCTTTGGGTTCTGTGTCTGGCGGAAGAAACTCTTCCCAAATGGTTGCTGGC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis