Browse Element(s) Details


Os.52853.1.S1_at

Description gb:AK069603.1
DB_XREF= gi:32979627
TID=Os.52853.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024D15, full insert sequence.
FL= gb:AK069603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3341011/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33350OsAffx.23485.1.S1_at11/111+18692022..18693256zinc-binding family protein, putative
LOC_Os01g33360OsAffx.23486.1.S1_at11/111+18696856..18698902dnaK protein, expressed
LOC_Os01g33370OsAffx.11299.1.S1_s_at11/111+18701672..18703510expressed protein
LOC_Os01g33370OsAffx.11299.1.S1_at11/111+18701672..18703510expressed protein
LOC_Os01g33380NANA1+18705398..18706363hypothetical protein
LOC_Os01g33390OsAffx.23487.1.S1_at11/111+18711004..18711632hypothetical protein
LOC_Os01g33400NANA1+18713139..18713773Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g33410Os.52853.1.S1_at11/111+18717069..18720977hAT family dimerisation domain containing protein, expressed
LOC_Os01g33420Os.27578.1.S1_at11/111+18721100..18728532glycosyl hydrolase family protein 27, putative, expressed
LOC_Os01g33430OsAffx.11301.1.S1_at11/111+18732198..18737254Leucine Rich Repeat family protein
LOC_Os01g33440OsAffx.673.1.S1_at11/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33440OsAffx.673.1.S1_x_at11/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33440OsAffx.17708.1.S1_at1/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33450OsAffx.23489.1.S1_at10/111+18743766..18745290expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52853.1.S1_at--1124--11Chr01:18720412..18720436 (25 bp)
ATTGTCACCGATCTACGTCGACCAA
LOC_Os01g33410
Os.52853.1.S1_at--896--1591Chr01:18720442..18720466 (25 bp)
AGCTGACGGTCTGCCTTTTATCGAG
LOC_Os01g33410
Os.52853.1.S1_at--532--8651Chr01:18720517..18720541 (25 bp)
TGGGCTCGTGGACTTTGACATGTAC
LOC_Os01g33410
Os.52853.1.S1_at--983--2611Chr01:18720567..18720591 (25 bp)
AACCGTTCAAGCACGAGCTGGAGCT
LOC_Os01g33410
Os.52853.1.S1_at--867--8491Chr01:18720647..18720671 (25 bp)
TGGCAGGACAACACGCTCAAGTACC
LOC_Os01g33410
Os.52853.1.S1_at--479--1571Chr01:18720734..18720758 (25 bp)
AGCTCGGTTTTCTTACCTGACAATG
LOC_Os01g33410
Os.52853.1.S1_at--141--851Chr01:18720756..18720780 (25 bp)
ATGGAAGCAGGAGCCTCGACGACTA
LOC_Os01g33410
Os.52853.1.S1_at--1056--5731Chr01:18720830..18720854 (25 bp)
GACTGGCTCCAGTATTCGCCATGAA
LOC_Os01g33410
Os.52853.1.S1_at--813--731Chr01:18720862..18720886 (25 bp)
ATGTAATTAGTACTCCCAGTCCCAT
LOC_Os01g33410
Os.52853.1.S1_at--1107--6231Chr01:18720892..18720916 (25 bp)
GATGGCAAGCCATTATTCGCGTAGA
LOC_Os01g33410
Os.52853.1.S1_at--490--6651Chr01:18720935..18720959 (25 bp)
GTTGATACTAACTGAGAGCTCCTGA
LOC_Os01g33410
Target Sequence 
ATTGTCACCGATCTACGTCGACCAAGTGCCAGCTGACGGTCTGCCTTTTATCGAGACCGGCGGCGCTCCGGCGACGGCTT
CACCGTCGACGGCGGCGGCTGGCGCTGGGCTCGTGGACTTTGACATGTACCTGTCGGAGGTGACCACCATGGGCCAACCG
TTCAAGCACGAGCTGGAGCTCTATCTGGAAGAGGCCCTCACCCAGCGCACCCCGGATTTCGACGTCCTGAAATGGTGGCA
GGACAACACGCTCAAGTACCCGACGTTGTCGAGGATGGCACGGGACGTGTTGGCCATCCCGATGTCCACGGTCGGCGTCG
GCAGCTCGGTTTTCTTACCTGACAATGGAAGCAGGAGCCTCGACGACTACCGGAGCTCACTGCGCCCTGAACTCGTGGAG
GCTCTCCTCTGCGCCAAGGACTGGCTCCAGTATTCGCCATGAAATCCGTAATGTAATTAGTACTCCCAGTCCCATGTGAA
GATGGCAAGCCATTATTCGCGTAGAGCTTATGGAATTAAACGTGTTGATACTAACTGAGAGCTCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis