Browse Element(s) Details


OsAffx.11299.1.S1_s_at

Description tigr:9629.m03126
TID=OsAffx.11299.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3337011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33290OsAffx.2138.1.S1_at11/111+18676688..18678717hypothetical protein
LOC_Os01g33300Os.8128.1.S1_at11/111+18679680..18681352Exopolygalacturonase precursor, putative, expressed
LOC_Os01g33324OsAffx.8880.1.S1_at1/111+18685874..18690126retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33350OsAffx.23485.1.S1_at11/111+18692022..18693256zinc-binding family protein, putative
LOC_Os01g33360OsAffx.23486.1.S1_at11/111+18696856..18698902dnaK protein, expressed
LOC_Os01g33370OsAffx.11299.1.S1_s_at11/111+18701672..18703510expressed protein
LOC_Os01g33370OsAffx.11299.1.S1_at11/111+18701672..18703510expressed protein
LOC_Os01g33380NANA1+18705398..18706363hypothetical protein
LOC_Os01g33390OsAffx.23487.1.S1_at11/111+18711004..18711632hypothetical protein
LOC_Os01g33400NANA1+18713139..18713773Helix-loop-helix DNA-binding domain containing protein
LOC_Os01g33410Os.52853.1.S1_at11/111+18717069..18720977hAT family dimerisation domain containing protein, expressed
LOC_Os01g33420Os.27578.1.S1_at11/111+18721100..18728532glycosyl hydrolase family protein 27, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11299.1.S1_s_at--969--10431Chr01:18702471..18702495 (25 bp)
TTATGTGATCAACAGCTCAAGGGTT
LOC_Os01g33370
OsAffx.11299.1.S1_s_at--244--6871Chr01:18702444..18702468 (25 bp)
GTATTTGACTGAGCGTCCTCAACTA
LOC_Os01g33370
OsAffx.11299.1.S1_s_at--42--791Chr01:18702369..18702393 (25 bp)
ATGTGAGATTTGCAGCCGTACTCTT
LOC_Os01g33370
OsAffx.11299.1.S1_s_at--1021--9031Chr01:18702359..18702383 (25 bp)
TGCAGCCGTACTCTTCTTGATGATT
LOC_Os01g33370
OsAffx.11299.1.S1_s_at--314--9591Chr01:18702345..18702369 (25 bp)
TCTTGATGATTTCCGGTTCTGCTCT
LOC_Os01g33370
OsAffx.11299.1.S1_s_at--811--9091Chr01:18702024..18702350 (25 bp)
TGCTCTCTTGGTTGCAATTTCGCAG
LOC_Os01g33370
OsAffx.11299.1.S1_s_at--1027--7531Chr01:18701973..18701997 (25 bp)
GTGGCTCAAAATGGTATTGCCTCCA
LOC_Os01g33370
OsAffx.11299.1.S1_s_at--31--831Chr01:18701963..18701987 (25 bp)
ATGGTATTGCCTCCAATGCAAATGA
LOC_Os01g33370
OsAffx.11299.1.S1_s_at--984--8191Chr01:18701901..18701925 (25 bp)
GGAAGTGCCAATGAGATATCTAGTG
LOC_Os01g33370
OsAffx.11299.1.S1_s_at--811--7391Chr01:18701879..18701903 (25 bp)
GTGATGCTAATAACTACCGCAATGA
LOC_Os01g33370
OsAffx.11299.1.S1_s_at--364--7511Chr01:18701728..18701752 (25 bp)
GTGGTTGTCATTGTGTGTCTTCCAT
LOC_Os01g33370
Target Sequence 
TTATGTGATCAACAGCTCAAGGGTTGTGTATTTGACTGAGCGTCCTCAACTACGGAGTTGTGGTGTTTCAAATACAAAGT
TATCATCATCACAAACTTATAAATGTGAGATTTGCAGCCGTACTCTTCTTGATGATTTCCGGTTCTGCTCTCTTGGTTGC
AATTTCGCAGCCATAAAAAGAGACAATGAGAAGAATGTGGCTCAAAATGGTATTGCCTCCAATGCAAATGAAGTTAAGAT
TGGCACCAACAATGGCAGCACAAATGCTGGAAGTGCCAATGAGATATCTAGTGATGCTAATAACTACCGCAATGAAATAC
CTTCATCAACAAGAGTTATTCGTCACCGTCGGAAGGGGATTCCTCGCCGTGCACCATTTTTCTGAAGAAAAGGCCTCAAT
TGACGTTGCCGAAGAAATCAATAAATGGACATGTAGCAAGGGTGGTTGTCATTGTGTGTCTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11299.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis